CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG19870
(
Caenorhabditis briggsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBG19870
T301590_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-46
M00692_2.00
Caenorhabditis elegans
NNNDWNHRN
NYDNWHNNN
PBM
Narasimhan et al.(2015)
pTH9924
0.991
0.943
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG19870
Nuclear receptor
95
165
ERCVGCGSDSAIRVHYGASSCHGCKAFFRRSVFEGRVYMCSAENQCDITNESRNRCRACRLRNCLDGGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis briggsae
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo01093s010
Brassica oleracea
Bo01093s010
N
Bo01167s020
Brassica oleracea
Bo01167s020
N
Bo08089s010
Brassica oleracea
Bo08089s010
N
Bo1g053550
Brassica oleracea
Bo1g053550
N
Bo2g134150
Brassica oleracea
Bo2g134150
N
Bo3g030260
Brassica oleracea
Bo3g030260
N
Bo3g078620
Brassica oleracea
Bo3g078620
N
Bo3g091380
Brassica oleracea
Bo3g091380
N
Bo3g155400
Brassica oleracea
Bo3g155400
N
Bo4g117120
Brassica oleracea
Bo4g117120
N
Bo4g154600
Brassica oleracea
Bo4g154600
N
Bo4g161430
Brassica oleracea
Bo4g161430
N
Bo4g162580
Brassica oleracea
Bo4g162580
N
Bo4g173170
Brassica oleracea
Bo4g173170
N
Bo4g178110
Brassica oleracea
Bo4g178110
N
Bo5g034250
Brassica oleracea
Bo5g034250
N
Bo5g041280
Brassica oleracea
Bo5g041280
N
Bo6g087610
Brassica oleracea
Bo6g087610
N
Bo7g016140
Brassica oleracea
Bo7g016140
N
Bo7g043390
Brassica oleracea
Bo7g043390
N
Bo7g064790
Brassica oleracea
Bo7g064790
N
Bo7g065750
Brassica oleracea
Bo7g065750
N
Bo7g067460
Brassica oleracea
Bo7g067460
N
Bo7g093290
Brassica oleracea
Bo7g093290
N
Bo7g101500
Brassica oleracea
Bo7g101500
N
Bo8g066500
Brassica oleracea
Bo8g066500
N
Bo9g140760
Brassica oleracea
Bo9g140760
N