Pvit_15554 (Pogona vitticeps)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 Pvit_15554 T312178_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		1.000 1.000
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		1.000 1.000
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		1.000 1.000
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		1.000 1.000
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		1.000 1.000
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		1.000 1.000
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		1.000 1.000
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		1.000 1.000
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		1.000 1.000
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		1.000 1.000
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		1.000 1.000
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		1.000 1.000
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		1.000 1.000
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		1.000 1.000
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		1.000 1.000
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		1.000 1.000
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		1.000 1.000
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		1.000 1.000
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.976 0.976
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.968 0.968
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.936 0.936
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.936 0.936
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.936 0.936
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.936 0.936
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.936 0.936
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.880 0.880
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.880 0.880
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.880 0.880
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.752 0.752
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.752 0.752
Poxn
M03946_2.00 		Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH		 SELEX
Nitta et al.(2015)
Poxn_1 		0.744 0.744
Poxn
M03947_2.00 		Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY		 SELEX
Nitta et al.(2015)
Poxn_2 		0.744 0.744
Poxn
M03948_2.00 		Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN		 SELEX
Nitta et al.(2015)
Poxn_3 		0.744 0.744
Poxn
M06437_2.00 		Drosophila melanogaster
RSCGTGACG
CGTCACGSY		 B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130 		0.744 0.744
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.736 0.736
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.736 0.736
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.736 0.736
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.736 0.736
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.736 0.736
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.736 0.736
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.736 0.736
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.736 0.736
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.736 0.736
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.736 0.736
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.736 0.736
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.728 0.728
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.728 0.728
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_15554 Paired box 5 129

Links

Other Paired box family TFs
Other Pogona vitticeps TFs

608 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011013 Aedes aegypti AAEL011013 I
AALB007758 Anopheles albimanus AALB007758 I
AALB007964 Anopheles albimanus AALB007964 I
Aan_R007307 Calypte anna Aan_R007307 N
Aan_R007898 Calypte anna Aan_R007898 N
AARA003714 Anopheles arabiensis AARA003714 I
AARA010261 Anopheles arabiensis AARA010261 N
AATE009363 Anopheles atroparvus AATE009363 I
ACHR009289 Anopheles christyi ACHR009289 N
ACOM023265 Anopheles coluzzii ACOM023265 I
ACOM027359 Anopheles coluzzii ACOM027359 I
ACOM042361 Anopheles coluzzii ACOM042361 N
ACUA010023 Anopheles culicifacies ACUA010023 N
ACUA025040 Anopheles culicifacies ACUA025040 I
ADAC005208 Anopheles darlingi ADAC005208 I
ADIR001121 Anopheles dirus ADIR001121 I
AEPI002639 Anopheles epiroticus AEPI002639 N
AFAF010850 Anopheles farauti AFAF010850 I
Afo_R003668 Aptenodytes forsteri Afo_R003668 N
Afo_R004895 Aptenodytes forsteri Afo_R004895 N
AFUN000102 Anopheles funestus AFUN000102 I
AFUN005600 Anopheles funestus AFUN005600 N
AGAP000773 Anopheles gambiae AGAP000773 N
AGAP010058 Anopheles gambiae AGAP010058 I
Alligator_sinensis_CCG004879.1 Alligator sinensis Alligator_sinensis_CCG004879.1 N
AMAM016994 Anopheles maculatus AMAM016994 N
AMEC013102 Anopheles melas AMEC013102 N
AMEC021622 Anopheles melas AMEC021622 I
AMEM005407 Anopheles merus AMEM005407 I
AMIN005129 Anopheles minimus AMIN005129 N
AMIN006671 Anopheles minimus AMIN006671 I
AQUA008255 Anopheles quadriannulatus AQUA008255 N
AQUA009218 Anopheles quadriannulatus AQUA009218 I
ASTEI03596 Anopheles stephensi ASTEI03596 N
ASTEI03921 Anopheles stephensi ASTEI03921 I
A_05788 Schistosoma haematobium A_05788 N
BGIBMGA003821 Bombyx mori BGIBMGA003821 I
Brh_R001528 Buceros rhinoceros Brh_R001528 N
CapteG165634 Capitella teleta CapteG165634 I
Cflo_03420--XP_394146.3_APIME Camponotus floridanus Cflo_03420--XP_394146.3_APIME I
CGI_10023142 Crassostrea gigas CGI_10023142 N
Cmyd_10005300 Chelonia mydas Cmyd_10005300 N
Cmyd_10020168 Chelonia mydas Cmyd_10020168 N
CPIJ009948 Culex quinquefasciatus CPIJ009948 I
CpipJ_CPIJ009948 Culex pipiens CpipJ_CPIJ009948 I
csin104979 Clonorchis sinensis csin104979 N
D915_00831 Fasciola hepatica D915_00831 N
DAPPUDRAFT_311851 Daphnia pulex DAPPUDRAFT_311851 I
SIM2 Anolis carolinensis ENSACAG00000008765 N
SIM1 Anolis carolinensis ENSACAG00000010256 N
ENSAMEG00000005588 Ailuropoda melanoleuca ENSAMEG00000005588 N
ENSAMEG00000014765 Ailuropoda melanoleuca ENSAMEG00000014765 N
ENSAMXG00000001377 Astyanax mexicanus ENSAMXG00000001377 N
ENSAMXG00000008897 Astyanax mexicanus ENSAMXG00000008897 N
ENSAPLG00000012534 Anas platyrhynchos ENSAPLG00000012534 N
ENSAPLG00000014050 Anas platyrhynchos ENSAPLG00000014050 N
SIM1 Bos taurus ENSBTAG00000002294 N
SIM1 Canis familiaris ENSCAFG00000003538 N
SIM2 Canis familiaris ENSCAFG00000009686 N
SIM1 Choloepus hoffmanni ENSCHOG00000005099 N
SIM1 Callithrix jacchus ENSCJAG00000001495 N
SIM2 Callithrix jacchus ENSCJAG00000002704 N
SIM1 Cavia porcellus ENSCPOG00000013987 N
SIM2 Cavia porcellus ENSCPOG00000023156 N
ENSCSAG00000008567 Chlorocebus sabaeus ENSCSAG00000008567 N
ENSCSAG00000014652 Chlorocebus sabaeus ENSCSAG00000014652 N
ENSCSAVG00000003790 Ciona savignyi ENSCSAVG00000003790 N
sim1b Danio rerio ENSDARG00000013789 N
sim1a Danio rerio ENSDARG00000023316 N
SIM2 Dasypus novemcinctus ENSDNOG00000003669 N
SIM1 Dasypus novemcinctus ENSDNOG00000010261 N
ENSDORG00000008569 Dipodomys ordii ENSDORG00000008569 N
Sim2 Dipodomys ordii ENSDORG00000011548 N
SIM1 Equus caballus ENSECAG00000009161 N
SIM1 Erinaceus europaeus ENSEEUG00000009806 N
SIM1 Echinops telfairi ENSETEG00000010692 N
SIM2 Echinops telfairi ENSETEG00000012055 N
ENSFALG00000005247 Ficedula albicollis ENSFALG00000005247 N
SIM1 Felis catus ENSFCAG00000005942 N
SIM2 Felis catus ENSFCAG00000023063 N
SIM1 Homo sapiens ENSG00000112246 N
SIM2 Homo sapiens ENSG00000159263 N
sim1b Gasterosteus aculeatus ENSGACG00000009479 N
sim1a Gasterosteus aculeatus ENSGACG00000014149 N
SIM1 Gallus gallus ENSGALG00000015466 N
SIM2 Gallus gallus ENSGALG00000016044 N
SIM2 Gorilla gorilla ENSGGOG00000014943 N
SIM1 Gorilla gorilla ENSGGOG00000017108 N
ENSGMOG00000006637 Gadus morhua ENSGMOG00000006637 N
ENSGMOG00000018211 Gadus morhua ENSGMOG00000018211 N
ENSLACG00000012873 Latimeria chalumnae ENSLACG00000012873 N
ENSLACG00000015924 Latimeria chalumnae ENSLACG00000015924 N
SIM2 Loxodonta africana ENSLAFG00000000122 N
SIM1 Loxodonta africana ENSLAFG00000006594 N
ENSLOCG00000005059 Lepisosteus oculatus ENSLOCG00000005059 N
ENSLOCG00000016561 Lepisosteus oculatus ENSLOCG00000016561 N
ENSMEUG00000011682 Macropus eugenii ENSMEUG00000011682 N
SIM1 Microcebus murinus ENSMICG00000008851 N
SIM2 Microcebus murinus ENSMICG00000013168 N
SIM1 Myotis lucifugus ENSMLUG00000002874 N
ENSMMUG00000015564 Macaca mulatta ENSMMUG00000015564 N
SIM1 Macaca mulatta ENSMMUG00000022285 N
SIM1 Monodelphis domestica ENSMODG00000018087 N
SIM2 Monodelphis domestica ENSMODG00000021008 N
ENSMPUG00000001668 Mustela putorius furo ENSMPUG00000001668 N
ENSMPUG00000008240 Mustela putorius furo ENSMPUG00000008240 N
Sim1 Mus musculus ENSMUSG00000019913 N
Sim2 Mus musculus ENSMUSG00000062713 N
ENSNLEG00000004481 Nomascus leucogenys ENSNLEG00000004481 N
ENSNLEG00000013870 Nomascus leucogenys ENSNLEG00000013870 N
SIM1 Ornithorhynchus anatinus ENSOANG00000008943 N
ENSOARG00000011739 Ovis aries ENSOARG00000011739 N
ENSOARG00000014072 Ovis aries ENSOARG00000014072 N
SIM1 Oryctolagus cuniculus ENSOCUG00000002759 N
SIM2 Oryctolagus cuniculus ENSOCUG00000012903 N
SIM1 Otolemur garnettii ENSOGAG00000009865 N
SIM2 Otolemur garnettii ENSOGAG00000028990 N
ENSONIG00000014696 Oreochromis niloticus ENSONIG00000014696 N
ENSONIG00000016544 Oreochromis niloticus ENSONIG00000016544 N
ENSONIG00000017476 Oreochromis niloticus ENSONIG00000017476 I
SIM1 Ochotona princeps ENSOPRG00000013168 N
ENSORLG00000005403 Oryzias latipes ENSORLG00000005403 I
ENSP00000262901 Macaca fascicularis ENSP00000262901 N
ENSP00000290399 Macaca fascicularis ENSP00000290399 N
ENSP00000290399-D1 Bos grunniens ENSP00000290399-D1 N
ENSP00000358210-D1 Bos grunniens ENSP00000358210-D1 N
ENSPANG00000011218 Papio anubis ENSPANG00000011218 N
ENSPANG00000020491 Papio anubis ENSPANG00000020491 N
SIM1 Procavia capensis ENSPCAG00000008763 N
SIM2 Procavia capensis ENSPCAG00000015289 N
ENSPFOG00000002603 Poecilia formosa ENSPFOG00000002603 N
ENSPPYG00000011405 Pongo abelii ENSPPYG00000011405 N
ENSPPYG00000016868 Pongo abelii ENSPPYG00000016868 N
ENSPSIG00000002579 Pelodiscus sinensis ENSPSIG00000002579 N
SIM2 Pan troglodytes ENSPTRG00000013894 N
SIM1 Pan troglodytes ENSPTRG00000018447 N
SIM2 Pteropus vampyrus ENSPVAG00000000853 N
SIM1 Pteropus vampyrus ENSPVAG00000012822 N
Sim1 Rattus norvegicus ENSRNOG00000037600 N
Sim2 Rattus norvegicus ENSRNOG00000054203 N
SIM1 Sorex araneus ENSSARG00000000736 N
ENSSHAG00000009425 Sarcophilus harrisii ENSSHAG00000009425 N
ENSSHAG00000016220 Sarcophilus harrisii ENSSHAG00000016220 N
SIM1 Sus scrofa ENSSSCG00000004357 N
ENSSTOG00000027359 Ictidomys tridecemlineatus ENSSTOG00000027359 N
SIM1 Tupaia belangeri ENSTBEG00000005949 N
SIM2 Tupaia belangeri ENSTBEG00000011573 N
SIM2 Taeniopygia guttata ENSTGUG00000004856 N
SIM1 Taeniopygia guttata ENSTGUG00000012278 N
sim1b Tetraodon nigroviridis ENSTNIG00000012304 N
ENSTNIG00000019722 Tetraodon nigroviridis ENSTNIG00000019722 N
SIM1 Takifugu rubripes ENSTRUG00000010040 N
sim1b Takifugu rubripes ENSTRUG00000018267 N
ENSTSYG00000005255 Tarsius syrichta ENSTSYG00000005255 N
ENSTSYG00000007116 Tarsius syrichta ENSTSYG00000007116 N
SIM1 Tursiops truncatus ENSTTRG00000008248 N
SIM2 Tursiops truncatus ENSTTRG00000017084 N
SIM1 Vicugna pacos ENSVPAG00000001407 N
ENSXMAG00000016785 Xiphophorus maculatus ENSXMAG00000016785 N
ENSXMAG00000019075 Xiphophorus maculatus ENSXMAG00000019075 N
estExt_GenewiseH_1.C_790104 Branchiostoma floridae estExt_GenewiseH_1.C_790104 N
Gfo_R003852 Geospiza fortis Gfo_R003852 N
Gfo_R010900 Geospiza fortis Gfo_R010900 N
HelroG89969 Helobdella robusta HelroG89969 N
HMEL008134 Heliconius melpomene HMEL008134 I
KGM_03494 Danaus plexippus KGM_03494 I
L798_01260 Zootermopsis nevadensis L798_01260 N
LCUP006648 Lucilia cuprina LCUP006648 I
LotgiG106747 Lottia gigantea LotgiG106747 N
MDOA008891 Musca domestica MDOA008891 I
Myotis_brandtii_SIM1_10034719 Myotis brandtii Myotis_brandtii_SIM1_10034719 N
Ocbimv22031168m.g Octopus bimaculoides Ocbimv22031168m.g N
Ogr12757 Ophisaurus gracilis Ogr12757 N
PHUM080130 Pediculus humanus PHUM080130 N
Pvit_04770 Pogona vitticeps Pvit_04770 N
Pvit_09298 Pogona vitticeps Pvit_09298 N
PXEA_0002490601 Protopolystoma xenopodis PXEA_0002490601 N
RPRC001595 Rhodnius prolixus RPRC001595 N
Sjc_0126700 Schistosoma japonicum Sjc_0126700 N
SMAR001482 Strigamia maritima SMAR001482 N
Smp_165270 Schistosoma mansoni Smp_165270 N
SMRZ_0000943001 Schistosoma margrebowiei SMRZ_0000943001 N
SMTD_0000610501 Schistosoma mattheei SMTD_0000610501 N
SMU15015785 Schmidtea mediterranea SMU15015785 N
SPU_013962 Strongylocentrotus purpuratus SPU_013962 N
SROB_0001806001 Schistosoma rodhaini SROB_0001806001 N
T265_14441 Opisthorchis viverrini T265_14441 N
Tal_R009812 Tyto alba Tal_R009812 N
tetur06g06010 Tetranychus urticae tetur06g06010 N
TRE_0000325801 Trichobilharzia regenti TRE_0000325801 N
sim2.S Xenopus laevis XB-GENE-1013959 N
sim1 Xenopus tropicalis XB-GENE-485816 N
XP_002941575 Xenopus tropicalis XP_002941575 N