lcor (Danio rerio)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSDARG00000100908 T313541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.978 0.978
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.933 0.933
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.933 0.933
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.889 0.889
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.822 0.822
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.800 0.800
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000140998 Pipsqueak 482 527

Links

Other Pipsqueak family TFs
Other Danio rerio TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28200.m000189 Ricinus communis 28200.m000189 I
28623.m000400 Ricinus communis 28623.m000400 I
30147.m014211 Ricinus communis 30147.m014211 I
VND1 Arabidopsis lyrata Al_scaffold_0003_3772 I
AMTR_s00011p00251570 Amborella trichopoda AMTR_s00011p00251570 I
AMTR_s00016p00196760 Amborella trichopoda AMTR_s00016p00196760 N
AMTR_s00017p00119990 Amborella trichopoda AMTR_s00017p00119990 I
Aquca_006_00155 Aquilegia coerulea Aquca_006_00155 I
Aquca_013_00692 Aquilegia coerulea Aquca_013_00692 I
NAC007 Arabidopsis thaliana AT1G12260 D
NAC037 Arabidopsis thaliana AT2G18060 D
ANAC076 Arabidopsis thaliana AT4G36160 D
BGIOSGA005950 Oryza indica BGIOSGA005950 I
BGIOSGA011539 Oryza indica BGIOSGA011539 I
BGIOSGA014649 Oryza indica BGIOSGA014649 I
BGIOSGA022108 Oryza indica BGIOSGA022108 I
BGIOSGA027807 Oryza indica BGIOSGA027807 N
BGIOSGA033343 Oryza indica BGIOSGA033343 I
Bo1g005810 Brassica oleracea Bo1g005810 I
Bo3g093950 Brassica oleracea Bo3g093950 I
Bo7g011640 Brassica oleracea Bo7g011640 I
Bo7g117820 Brassica oleracea Bo7g117820 I
Bo8g062650 Brassica oleracea Bo8g062650 I
Bostr.13671s0233 Boechera stricta Bostr.13671s0233 I
Bostr.18351s0273 Boechera stricta Bostr.18351s0273 I
Bostr.22157s0066 Boechera stricta Bostr.22157s0066 I
Bostr.7867s1483 Boechera stricta Bostr.7867s1483 I
Bra011667 Brassica rapa Bra011667 I
Bra016783 Brassica rapa Bra016783 I
Bra017750 Brassica rapa Bra017750 I
Bra039915 Brassica rapa Bra039915 I
BRADI1G52187 Brachypodium distachyon BRADI1G52187 I
BRADI3G50067 Brachypodium distachyon BRADI3G50067 I
BRADI5G16917 Brachypodium distachyon BRADI5G16917 N
BRADI5G27467 Brachypodium distachyon BRADI5G27467 N
Cagra.0568s0135 Capsella grandiflora Cagra.0568s0135 I
Cagra.1670s0031 Capsella grandiflora Cagra.1670s0031 I
Cagra.4734s0006 Capsella grandiflora Cagra.4734s0006 I
Carubv10004997m.g Capsella rubella Carubv10004997m.g I
Carubv10009366m.g Capsella rubella Carubv10009366m.g I
Carubv10022351m.g Capsella rubella Carubv10022351m.g I
cassava24947.valid.m1 Manihot esculenta cassava24947.valid.m1 I
cassava26615.m1 Manihot esculenta cassava26615.m1 I
cassava46384.m1 Manihot esculenta cassava46384.m1 I
cassava47039.m1 Manihot esculenta cassava47039.m1 I
Ca_02365 Cicer arietinum Ca_02365 I
Ca_08693 Cicer arietinum Ca_08693 I
Ciclev10006988m.g Citrus clementina Ciclev10006988m.g I
Ciclev10024218m.g Citrus clementina Ciclev10024218m.g I
Ciclev10026114m.g Citrus clementina Ciclev10026114m.g I
Cla005768 Citrullus lanatus Cla005768 I
Cla006372 Citrullus lanatus Cla006372 I
Cla014492 Citrullus lanatus Cla014492 I
Cucsa.043420 Cucumis sativus Cucsa.043420 I
Cucsa.251620 Cucumis sativus Cucsa.251620 I
Cucsa.302120 Cucumis sativus Cucsa.302120 I
Cucsa.320590 Cucumis sativus Cucsa.320590 I
estExt_gwp_gw1.C_2230002 Physcomitrella patens estExt_gwp_gw1.C_2230002 N
Eucgr.A02887 Eucalyptus grandis Eucgr.A02887 I
Eucgr.I02366 Eucalyptus grandis Eucgr.I02366 I
evm.TU.supercontig_29.118 Carica papaya evm.TU.supercontig_29.118 I
evm.TU.supercontig_3.311 Carica papaya evm.TU.supercontig_3.311 I
evm.TU.supercontig_6.226 Carica papaya evm.TU.supercontig_6.226 I
e_gw1.161.49.1 Physcomitrella patens e_gw1.161.49.1 I
e_gw1.201.156.1 Physcomitrella patens e_gw1.201.156.1 I
F775_00942 Aegilops tauschii F775_00942 N
F775_07224 Aegilops tauschii F775_07224 I
F775_08057 Aegilops tauschii F775_08057 I
F775_20020 Aegilops tauschii F775_20020 I
VND4 Arabidopsis lyrata fgenesh2_kg.1__1330__AT1G12260.1 I
ANAC076 Arabidopsis lyrata fgenesh2_kg.7__450__AT4G36160.1 I
gene14869-v1.0-hybrid Fragaria vesca gene14869-v1.0-hybrid I
gene21248-v1.0-hybrid Fragaria vesca gene21248-v1.0-hybrid I
gene32254-v1.0-hybrid Fragaria vesca gene32254-v1.0-hybrid I
GLYMA04G13660 Glycine max GLYMA04G13660 I
GLYMA05G04250 Glycine max GLYMA05G04250 I
GLYMA06G38440 Glycine max GLYMA06G38440 I
GLYMA06G47680 Glycine max GLYMA06G47680 I
GLYMA09G36600 Glycine max GLYMA09G36600 I
GLYMA11G03340 Glycine max GLYMA11G03340 I
GLYMA12G00760 Glycine max GLYMA12G00760 I
GLYMA12G22790 Glycine max GLYMA12G22790 I
GLYMA17G14700 Glycine max GLYMA17G14700 I
Gorai.001G048200 Gossypium raimondii Gorai.001G048200 I
Gorai.003G010700 Gossypium raimondii Gorai.003G010700 I
Gorai.003G114100 Gossypium raimondii Gorai.003G114100 I
Gorai.003G169000 Gossypium raimondii Gorai.003G169000 I
Gorai.004G201100 Gossypium raimondii Gorai.004G201100 I
Gorai.007G048000 Gossypium raimondii Gorai.007G048000 I
Gorai.007G196400 Gossypium raimondii Gorai.007G196400 I
Gorai.008G063600 Gossypium raimondii Gorai.008G063600 I
Gorai.008G236400 Gossypium raimondii Gorai.008G236400 I
GRMZM2G025642 Zea mays GRMZM2G025642 I
GRMZM2G041668 Zea mays GRMZM2G041668 I
GRMZM2G178998 Zea mays GRMZM2G178998 I
GRMZM2G315140 Zea mays GRMZM2G315140 I
GRMZM2G354151 Zea mays GRMZM2G354151 I
GRMZM2G440219 Zea mays GRMZM2G440219 I
GSMUA_Achr11G03040_001 Musa acuminata GSMUA_Achr11G03040_001 I
GSMUA_Achr11G03780_001 Musa acuminata GSMUA_Achr11G03780_001 I
GSMUA_Achr11G17510_001 Musa acuminata GSMUA_Achr11G17510_001 I
GSMUA_Achr3G22360_001 Musa acuminata GSMUA_Achr3G22360_001 N
GSMUA_Achr6G36840_001 Musa acuminata GSMUA_Achr6G36840_001 I
GSMUA_Achr7G06640_001 Musa acuminata GSMUA_Achr7G06640_001 I
GSMUA_Achr8G11590_001 Musa acuminata GSMUA_Achr8G11590_001 I
GSMUA_Achr8G12100_001 Musa acuminata GSMUA_Achr8G12100_001 I
LjSGA_013013.1 Lotus japonicus LjSGA_013013.1 I
LjSGA_069569.1 Lotus japonicus LjSGA_069569.1 I
LPERR02G21010 Leersia perrieri LPERR02G21010 I
LPERR03G01990 Leersia perrieri LPERR03G01990 I
LPERR04G16200 Leersia perrieri LPERR04G16200 I
LPERR06G00240 Leersia perrieri LPERR06G00240 I
LPERR08G00380 Leersia perrieri LPERR08G00380 N
Lus10024601.g Linum usitatissimum Lus10024601.g I
Lus10028372.g Linum usitatissimum Lus10028372.g I
Lus10031142.g Linum usitatissimum Lus10031142.g I
Lus10031721.g Linum usitatissimum Lus10031721.g I
Lus10032238.g Linum usitatissimum Lus10032238.g I
Lus10041822.g Linum usitatissimum Lus10041822.g I
MDP0000136180 Malus domestica MDP0000136180 I
MDP0000176447 Malus domestica MDP0000176447 I
MDP0000226701 Malus domestica MDP0000226701 I
MDP0000298965 Malus domestica MDP0000298965 I
MDP0000299959 Malus domestica MDP0000299959 I
MDP0000320566 Malus domestica MDP0000320566 I
mgf020336m Mimulus guttatus mgf020336m I
mgf021916m Mimulus guttatus mgf021916m I
mgf022574m Mimulus guttatus mgf022574m I
MLOC_15746 Hordeum vulgare MLOC_15746 I
MLOC_53086 Hordeum vulgare MLOC_53086 I
MLOC_56103 Hordeum vulgare MLOC_56103 I
MLOC_56769 Hordeum vulgare MLOC_56769 I
MTR_4g036030 Medicago truncatula MTR_4g036030 I
MTR_4g101680 Medicago truncatula MTR_4g101680 I
MTR_5g012080 Medicago truncatula MTR_5g012080 I
OB02G33070 Oryza brachyantha OB02G33070 I
OB03G12100 Oryza brachyantha OB03G12100 I
OB04G27030 Oryza brachyantha OB04G27030 I
OB08G10370 Oryza brachyantha OB08G10370 N
OB10G23740 Oryza brachyantha OB10G23740 I
OBART02G25700 Oryza barthii OBART02G25700 I
OBART03G02180 Oryza barthii OBART03G02180 I
OBART04G20020 Oryza barthii OBART04G20020 I
OBART06G00240 Oryza barthii OBART06G00240 I
OBART08G00290 Oryza barthii OBART08G00290 N
OGLUM02G26220 Oryza glumaepatula OGLUM02G26220 I
OGLUM03G02130 Oryza glumaepatula OGLUM03G02130 I
OGLUM04G19900 Oryza glumaepatula OGLUM04G19900 I
OGLUM06G00210 Oryza glumaepatula OGLUM06G00210 I
OGLUM08G00350 Oryza glumaepatula OGLUM08G00350 N
OLONG_011521 Oryza longistaminata OLONG_011521 I
OLONG_016152 Oryza longistaminata OLONG_016152 I
OLONG_018618 Oryza longistaminata OLONG_018618 I
OMERI02G25220 Oryza meridionalis OMERI02G25220 I
OMERI03G02020 Oryza meridionalis OMERI03G02020 I
OMERI03G30800 Oryza meridionalis OMERI03G30800 I
OMERI06G00230 Oryza meridionalis OMERI06G00230 I
OMERI08G00600 Oryza meridionalis OMERI08G00600 N
OMERI10G13220 Oryza meridionalis OMERI10G13220 I
ONIVA02G28150 Oryza nivara ONIVA02G28150 I
ONIVA03G01790 Oryza nivara ONIVA03G01790 I
ONIVA04G18230 Oryza nivara ONIVA04G18230 I
ONIVA06G00260 Oryza nivara ONIVA06G00260 I
ONIVA08G00280 Oryza nivara ONIVA08G00280 N
OPUNC02G23550 Oryza punctata OPUNC02G23550 I
OPUNC03G01920 Oryza punctata OPUNC03G01920 I
OPUNC04G17680 Oryza punctata OPUNC04G17680 I
OPUNC06G00220 Oryza punctata OPUNC06G00220 I
OPUNC08G00360 Oryza punctata OPUNC08G00360 N
orange1.1g018596m.g Citrus sinensis orange1.1g018596m.g I
orange1.1g020354m.g Citrus sinensis orange1.1g020354m.g I
orange1.1g021187m.g Citrus sinensis orange1.1g021187m.g I
ORGLA03G0019500 Oryza glaberrima ORGLA03G0019500 I
ORGLA04G0171200 Oryza glaberrima ORGLA04G0171200 I
ORGLA06G0002300 Oryza glaberrima ORGLA06G0002300 I
ORUFI02G27110 Oryza rufipogon ORUFI02G27110 I
ORUFI03G01920 Oryza rufipogon ORUFI03G01920 I
ORUFI04G21580 Oryza rufipogon ORUFI04G21580 I
ORUFI06G00250 Oryza rufipogon ORUFI06G00250 I
ORUFI08G00330 Oryza rufipogon ORUFI08G00330 N
OS02G0643600 Oryza sativa OS02G0643600 I
OS04G0536500 Oryza sativa OS04G0536500 I
OS06G0104200 Oryza sativa OS06G0104200 I
OS08G0103900 Oryza sativa OS08G0103900 N
OS10G0532000 Oryza sativa OS10G0532000 I
Pavir.Da02426 Panicum virgatum Pavir.Da02426 I
Pavir.Gb00744 Panicum virgatum Pavir.Gb00744 I
Pavir.Ia02924 Panicum virgatum Pavir.Ia02924 I
Pavir.Ib00161 Panicum virgatum Pavir.Ib00161 I
Pavir.Ib02477 Panicum virgatum Pavir.Ib02477 I
Pavir.J07126 Panicum virgatum Pavir.J07126 I
Pavir.J20890 Panicum virgatum Pavir.J20890 N
Pavir.J26987 Panicum virgatum Pavir.J26987 I
Pavir.J31179 Panicum virgatum Pavir.J31179 N
Pavir.J32898 Panicum virgatum Pavir.J32898 I
Pavir.J39804 Panicum virgatum Pavir.J39804 I
PDK_20s1306451g001 Phoenix dactylifera PDK_20s1306451g001 I
PDK_20s1423861g001 Phoenix dactylifera PDK_20s1423861g001 N
PGSC0003DMG400021576 Solanum tuberosum PGSC0003DMG400021576 I
PGSC0003DMG401003552 Solanum tuberosum PGSC0003DMG401003552 I
PK11173.1 Cannabis sativa PK11173.1 I
PK23416.1 Cannabis sativa PK23416.1 I
PK28510.1 Cannabis sativa PK28510.1 I
Pm019488 Prunus mume Pm019488 I
Pm019490 Prunus mume Pm019490 I
Pm023559 Prunus mume Pm023559 I
Pm026735 Prunus mume Pm026735 I
POPTR_0001s00220 Populus trichocarpa POPTR_0001s00220 I
POPTR_0003s11250 Populus trichocarpa POPTR_0003s11250 I
POPTR_0005s11870 Populus trichocarpa POPTR_0005s11870 I
POPTR_0012s14660 Populus trichocarpa POPTR_0012s14660 I
POPTR_0015s14770 Populus trichocarpa POPTR_0015s14770 I
PRUPE_ppa015786mg Prunus persica PRUPE_ppa015786mg I
PRUPE_ppa020139mg Prunus persica PRUPE_ppa020139mg I
PRUPE_ppa022264mg Prunus persica PRUPE_ppa022264mg I
SapurV1A.0129s0210 Salix purpurea SapurV1A.0129s0210 I
SapurV1A.0166s0460 Salix purpurea SapurV1A.0166s0460 I
SapurV1A.0367s0210 Salix purpurea SapurV1A.0367s0210 I
SapurV1A.0487s0230 Salix purpurea SapurV1A.0487s0230 I
SapurV1A.0634s0120 Salix purpurea SapurV1A.0634s0120 I
SapurV1A.1275s0070 Salix purpurea SapurV1A.1275s0070 I
SapurV1A.3982s0010 Salix purpurea SapurV1A.3982s0010 I
Sb01g030760 Sorghum bicolor Sb01g030760 I
Sb01g048730 Sorghum bicolor Sb01g048730 I
Sb04g033570 Sorghum bicolor Sb04g033570 I
Sb06g023780 Sorghum bicolor Sb06g023780 I
Sb07g000470 Sorghum bicolor Sb07g000470 N
Sb10g000460 Sorghum bicolor Sb10g000460 I
SELMODRAFT_100973 Selaginella moellendorffii SELMODRAFT_100973 I
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I
SELMODRAFT_451784 Selaginella moellendorffii SELMODRAFT_451784 I
SELMODRAFT_57388 Selaginella moellendorffii SELMODRAFT_57388 I
SELMODRAFT_71405 Selaginella moellendorffii SELMODRAFT_71405 I
SELMODRAFT_89986 Selaginella moellendorffii SELMODRAFT_89986 I
SELMODRAFT_93824 Selaginella moellendorffii SELMODRAFT_93824 I
Si006829m.g Setaria italica Si006829m.g I
Si010504m.g Setaria italica Si010504m.g I
Si014149m.g Setaria italica Si014149m.g N
Si017679m.g Setaria italica Si017679m.g I
Si036363m.g Setaria italica Si036363m.g I
Si039467m.g Setaria italica Si039467m.g I
Solyc02g084350.2 Solanum lycopersicum Solyc02g084350.2 I
Solyc06g034340.1 Solanum lycopersicum Solyc06g034340.1 I
TCM_000235 Theobroma cacao TCM_000235 I
TCM_014939 Theobroma cacao TCM_014939 I
TCM_016035 Theobroma cacao TCM_016035 I
Thhalv10005380m.g Eutrema salsugineum Thhalv10005380m.g I
Thhalv10007823m.g Eutrema salsugineum Thhalv10007823m.g I
Thhalv10022756m.g Eutrema salsugineum Thhalv10022756m.g I
Thhalv10025510m.g Eutrema salsugineum Thhalv10025510m.g I
Traes_2AL_82C3E7E14 Triticum aestivum Traes_2AL_82C3E7E14 I
Traes_2BL_24E6E8DF9 Triticum aestivum Traes_2BL_24E6E8DF9 I
Traes_2DL_343FA6101 Triticum aestivum Traes_2DL_343FA6101 I
Traes_4AL_F853C8660 Triticum aestivum Traes_4AL_F853C8660 I
Traes_4BL_03B8EA3BF Triticum aestivum Traes_4BL_03B8EA3BF I
Traes_4DL_54E14ABCB Triticum aestivum Traes_4DL_54E14ABCB I
Traes_6AL_BB7207AD1 Triticum aestivum Traes_6AL_BB7207AD1 I
Traes_6BL_8F77BF933 Triticum aestivum Traes_6BL_8F77BF933 I
Traes_6DL_D0BE06357 Triticum aestivum Traes_6DL_D0BE06357 I
Traes_7AS_6398221B7 Triticum aestivum Traes_7AS_6398221B7 I
Traes_7DL_DF64397D7 Triticum aestivum Traes_7DL_DF64397D7 N
Traes_7DS_7F0AF83B0 Triticum aestivum Traes_7DS_7F0AF83B0 I
TRIUR3_08851 Triticum urartu TRIUR3_08851 I
TRIUR3_20707 Triticum urartu TRIUR3_20707 I
VIT_02s0154g00020 Vitis vinifera VIT_02s0154g00020 I
ANAC076 Vitis vinifera VIT_04s0023g03110 I
VIT_16s0022g00690 Vitis vinifera VIT_16s0022g00690 I