ENSLACG00000017771 (Latimeria chalumnae)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSLACG00000017771 T313567_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		0.988 0.988
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000020220 Pipsqueak 202 239
ENSLACP00000020220 Pipsqueak 452 497
ENSLACP00000022820 Pipsqueak 257 294
ENSLACP00000022820 Pipsqueak 507 552

Links

Other Pipsqueak family TFs
Other Latimeria chalumnae TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA034853 Oryza indica BGIOSGA034853 N
BGIOSGA037037 Oryza indica BGIOSGA037037 I
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I
GRMZM2G079365 Zea mays GRMZM2G079365 I
GRMZM5G821024 Zea mays GRMZM5G821024 I
LPERR11G03390 Leersia perrieri LPERR11G03390 I
LPERR12G03530 Leersia perrieri LPERR12G03530 I
MLOC_71198 Hordeum vulgare MLOC_71198 I
OB11G13300 Oryza brachyantha OB11G13300 I
OB12G13750 Oryza brachyantha OB12G13750 I
OBART11G03920 Oryza barthii OBART11G03920 I
OBART12G03760 Oryza barthii OBART12G03760 I
OGLUM11G03630 Oryza glumaepatula OGLUM11G03630 N
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I
OLONG_001598 Oryza longistaminata OLONG_001598 I
OMERI12G02030 Oryza meridionalis OMERI12G02030 I
ONIVA11G04030 Oryza nivara ONIVA11G04030 I
ONIVA12G03450 Oryza nivara ONIVA12G03450 I
OPUNC11G03640 Oryza punctata OPUNC11G03640 N
OPUNC12G03640 Oryza punctata OPUNC12G03640 N
ORGLA11G0036500 Oryza glaberrima ORGLA11G0036500 I
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I
OS11G0160500 Oryza sativa OS11G0160500 N
OS12G0162500 Oryza sativa OS12G0162500 I
Pavir.Ca00211 Panicum virgatum Pavir.Ca00211 I
Pavir.Cb01934 Panicum virgatum Pavir.Cb01934 N
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I
Sb05g003810 Sorghum bicolor Sb05g003810 I
Sb08g003940 Sorghum bicolor Sb08g003940 I
Si010549m.g Setaria italica Si010549m.g I
Si026605m.g Setaria italica Si026605m.g I
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I
Traes_5BL_4700CC358 Triticum aestivum Traes_5BL_4700CC358 N
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I
TRIUR3_12877 Triticum urartu TRIUR3_12877 I
TRIUR3_31416 Triticum urartu TRIUR3_31416 I