Gfo_R010322 (Geospiza fortis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Gfo_R010322 T314439_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010322 Pipsqueak 226 263
Gfo_R010322 Pipsqueak 475 520

Links

Other Pipsqueak family TFs
Other Geospiza fortis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007397 Calypte anna Aan_R007397 I 0.988
Afo_R006360 Aptenodytes forsteri Afo_R006360 I 1.000
Alligator_sinensis_CCG006744.1 Alligator sinensis Alligator_sinensis_CCG006744.1 I 1.000
Brh_R013202 Buceros rhinoceros Brh_R013202 I 1.000
LCORL Anolis carolinensis ENSACAG00000002012 I 0.988
ENSAMEG00000000192 Ailuropoda melanoleuca ENSAMEG00000000192 I 0.988
ENSAPLG00000006384 Anas platyrhynchos ENSAPLG00000006384 I 1.000
LCORL Bos taurus ENSBTAG00000046561 I 1.000
LCORL Canis familiaris ENSCAFG00000016672 I 1.000
LCORL Callithrix jacchus ENSCJAG00000012800 I 1.000
ENSCPOG00000003269 Cavia porcellus ENSCPOG00000003269 I 1.000
ENSCSAG00000016522 Chlorocebus sabaeus ENSCSAG00000016522 I 0.988
lcorl Danio rerio ENSDARG00000070098 I 0.825
LCORL Dasypus novemcinctus ENSDNOG00000001545 I 1.000
ENSDORG00000003797 Dipodomys ordii ENSDORG00000003797 I 0.988
LCORL Equus caballus ENSECAG00000000648 I 0.988
LCORL Erinaceus europaeus ENSEEUG00000000419 I 0.988
ENSFALG00000009227 Ficedula albicollis ENSFALG00000009227 I 1.000
LCORL Felis catus ENSFCAG00000029474 I 0.988
LCORL Homo sapiens ENSG00000178177 D 0.988
LCORL Gallus gallus ENSGALG00000014421 I 1.000
LCORL Gorilla gorilla ENSGGOG00000014894 I 1.000
ENSLACG00000017771 Latimeria chalumnae ENSLACG00000017771 I 0.988
LCORL Loxodonta africana ENSLAFG00000009691 I 0.988
LCORL Meleagris gallopavo ENSMGAG00000012554 I 1.000
ENSMICG00000008878 Microcebus murinus ENSMICG00000008878 I 0.988
LCORL Myotis lucifugus ENSMLUG00000013781 I 0.988
LCORL Monodelphis domestica ENSMODG00000000757 I 1.000
ENSMPUG00000002301 Mustela putorius furo ENSMPUG00000002301 I 1.000
Lcorl Mus musculus ENSMUSG00000015882 I 1.000
ENSNLEG00000016679 Nomascus leucogenys ENSNLEG00000016679 I 0.988
ENSOARG00000004333 Ovis aries ENSOARG00000004333 I 1.000
LCORL Oryctolagus cuniculus ENSOCUG00000006802 I 1.000
LCORL Otolemur garnettii ENSOGAG00000005593 I 1.000
ENSP00000371661 Macaca fascicularis ENSP00000371661 I 0.988
ENSP00000371661-D1 Bos grunniens ENSP00000371661-D1 I 1.000
ENSPANG00000024022 Papio anubis ENSPANG00000024022 I 1.000
LCORL Procavia capensis ENSPCAG00000007105 I 0.988
ENSPSIG00000017051 Pelodiscus sinensis ENSPSIG00000017051 I 1.000
LCORL Pan troglodytes ENSPTRG00000015943 I 1.000
LCORL Pteropus vampyrus ENSPVAG00000013601 I 0.988
ENSSHAG00000015746 Sarcophilus harrisii ENSSHAG00000015746 I 0.988
LCORL Sus scrofa ENSSSCG00000008748 I 1.000
ENSSTOG00000000960 Ictidomys tridecemlineatus ENSSTOG00000000960 I 0.988
LCORL Taeniopygia guttata ENSTGUG00000009625 I 1.000
ENSTSYG00000014055 Tarsius syrichta ENSTSYG00000014055 I 0.988
LCORL Tursiops truncatus ENSTTRG00000016951 I 0.988
LCORL Vicugna pacos ENSVPAG00000010356 I 0.988
Myotis_brandtii_LCORL_10024397 Myotis brandtii Myotis_brandtii_LCORL_10024397 I 0.988
Ogr00836 Ophisaurus gracilis Ogr00836 I 0.976
Pvit_18026 Pogona vitticeps Pvit_18026 I 1.000
Tal_R001804 Tyto alba Tal_R001804 I 1.000