Pvit_17823 (Pogona vitticeps)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Pvit_17823 T314461_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_17823 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Pogona vitticeps TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB000386 Anopheles albimanus AALB000386 N
AARA012000 Anopheles arabiensis AARA012000 N
AATE011564 Anopheles atroparvus AATE011564 N
ACEP20262 Atta cephalotes ACEP20262 N
ACHR001520 Anopheles christyi ACHR001520 N
ACOM030990 Anopheles coluzzii ACOM030990 N
ACUA016707 Anopheles culicifacies ACUA016707 N
ADAC009616 Anopheles darlingi ADAC009616 N
ADIR000731 Anopheles dirus ADIR000731 N
AEPI000371 Anopheles epiroticus AEPI000371 N
AFAF013524 Anopheles farauti AFAF013524 N
AFUN009855 Anopheles funestus AFUN009855 N
AGAP007801 Anopheles gambiae AGAP007801 N
AMAM005791 Anopheles maculatus AMAM005791 N
AMEC005720 Anopheles melas AMEC005720 N
AMEM004251 Anopheles merus AMEM004251 N
AMIN006391 Anopheles minimus AMIN006391 N
AQUA003661 Anopheles quadriannulatus AQUA003661 N
ASTEI01654 Anopheles stephensi ASTEI01654 N
BGIBMGA013421 Bombyx mori BGIBMGA013421 N
Cflo_07829--XP_393735.3_APIME Camponotus floridanus Cflo_07829--XP_393735.3_APIME N
CPIJ016941 Culex quinquefasciatus CPIJ016941 N
CpipJ_CPIJ016941 Culex pipiens CpipJ_CPIJ016941 N
GA12711 Drosophila pseudoobscura FBgn0072757 N
GH13383 Drosophila grimshawi FBgn0120859 N
GI17625 Drosophila mojavensis FBgn0140369 N
GL19569 Drosophila persimilis FBgn0157167 N
GJ17539 Drosophila virilis FBgn0204709 N
GK24157 Drosophila willistoni FBgn0226119 N
GB44976 Apis mellifera GB44976 N
HMEL016601 Heliconius melpomene HMEL016601 N
LCUP005662 Lucilia cuprina LCUP005662 N
LDEC011960 Leptinotarsa decemlineata LDEC011960 N
LLOJ007416 Lutzomyia longipalpis LLOJ007416 N
MCINX006210 Melitaea cinxia MCINX006210 N
MDOA013595 Musca domestica MDOA013595 N
MESCA004747 Megaselia scalaris MESCA004747 N
NV10599 Nasonia vitripennis NV10599 N
SINV19899 Solenopsis invicta SINV19899 N
TC001609 Tribolium castaneum TC001609 N