CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo2g134600
(
Brassica oleracea
)
PLATZ
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04640 (PLATZ)
IPR006734
Bo2g134600
T315238_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
0.885
0.885
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo2g134600.1
PLATZ
67
144
CKYVYQDVLRLLDIQHYFDCSEIQTYKINGEQAIHLNSRPQAKDARPSTKSKNAGSCVTCKRYIQDRPNRFCSISCKI
Links
Other
PLATZ
family TFs
Other
Brassica oleracea
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29968.m000644
Ricinus communis
29968.m000644
I
0.705
AT2G01818
Arabidopsis thaliana
AT2G01818
D
0.885
Bo7g078820
Brassica oleracea
Bo7g078820
I
0.974
Bostr.0556s0005
Boechera stricta
Bostr.0556s0005
I
0.949
Cagra.2235s0037
Capsella grandiflora
Cagra.2235s0037
I
0.949
Carubv10017978m.g
Capsella rubella
Carubv10017978m.g
I
0.949
Ciclev10016611m.g
Citrus clementina
Ciclev10016611m.g
N
0.718
Eucgr.G02080
Eucalyptus grandis
Eucgr.G02080
I
0.718
evm.TU.supercontig_2.160
Carica papaya
evm.TU.supercontig_2.160
I
0.731
fgenesh2_kg.5__89__AT2G01818.1
Arabidopsis lyrata
fgenesh2_kg.5__89__AT2G01818.1
I
0.949
Gorai.005G152700
Gossypium raimondii
Gorai.005G152700
I
0.705
Gorai.013G029900
Gossypium raimondii
Gorai.013G029900
I
0.718
Lus10013242.g
Linum usitatissimum
Lus10013242.g
I
0.705
orange1.1g027579m.g
Citrus sinensis
orange1.1g027579m.g
N
0.718
PK02661.1
Cannabis sativa
PK02661.1
I
0.756
POPTR_0008s13660
Populus trichocarpa
POPTR_0008s13660
I
0.705
POPTR_0010s11410
Populus trichocarpa
POPTR_0010s11410
I
0.705
SapurV1A.0015s0650
Salix purpurea
SapurV1A.0015s0650
I
0.709
Thhalv10005480m.g
Eutrema salsugineum
Thhalv10005480m.g
I
0.936