Tal_R005550 (Tyto alba)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Tal_R005550 T317823_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RELB
M08161_2.00 		Homo sapiens
NNATTCCCCNN
NNGGGGAATNN		 ChIP-seq
Mathelier et al.(2014)
MA1117.1 		0.953 0.953
RELB
M09347_2.00 		Homo sapiens
VGGGRMTTTSMH
DKSAAAKYCCCB		 Misc
Kulakovskiy et al.(2013)
RELB_HUMAN.H11MO.0.C 		0.953 0.953
Relb
M09352_2.00 		Mus musculus
VGGGRMTTTSMH
DKSAAAKYCCCB		 Misc
Kulakovskiy et al.(2013)
RELB_MOUSE.H11MO.0.C 		0.953 0.953
RELB
M11227_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELBP50_Q3 		0.953 0.953
RELA
M02711_2.00 		Homo sapiens
SGGRVTTTCC
GGAAABYCCS		 SELEX
Mathelier et al.(2014)
MA0107.1 		0.721 0.721
RELA
M07999_2.00 		Homo sapiens
DGGGRMTTTCCMVN
NBKGGAAAKYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM10847_NFKB_Stanford 		0.721 0.721
RELA
M08000_2.00 		Homo sapiens
NDGGGRMWTTCCHN
NDGGAAWKYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_NFKB_Stanford 		0.721 0.721
RELA
M08001_2.00 		Homo sapiens
NDGGGRMTTTCCMVN
NBKGGAAAKYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM12891_NFKB_Stanford 		0.721 0.721
RELA
M08002_2.00 		Homo sapiens
DGGGRHTTTCCMVNN
NNBKGGAAADYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM12892_NFKB_Stanford 		0.721 0.721
RELA
M08003_2.00 		Homo sapiens
DGGGRVTTTCCHVN
NBDGGAAABYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM15510_NFKB_Stanford 		0.721 0.721
RELA
M08004_2.00 		Homo sapiens
NDGGGRMTTTCCMNN
NNKGGAAAKYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM18505_NFKB_Stanford 		0.721 0.721
RELA
M08005_2.00 		Homo sapiens
NDGGGRHTTTCCMVN
NBKGGAAADYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM18526_NFKB_Stanford 		0.721 0.721
RELA
M08006_2.00 		Homo sapiens
GGGRVTTTCCM
KGGAAABYCCC		 ChIP-seq
Gerstein et al.(2012)
GM18951_NFKB_Stanford 		0.721 0.721
RELA
M08007_2.00 		Homo sapiens
DGGGRMTTTCCMV
BKGGAAAKYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM19099_NFKB_Stanford 		0.721 0.721
RELA
M08008_2.00 		Homo sapiens
DGGGRMTTTCCMNNN
NNNKGGAAAKYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM19193_NFKB_Stanford 		0.721 0.721
Rela
M08039_2.00 		Mus musculus
DGGRVTTTCCM
KGGAAABYCCH		 ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input_LPSstim 		0.721 0.721
Rela
M08038_2.00 		Mus musculus
HHYYYCYYNYHYYYNHYYYYCYWNNSYTBY
RVARSNNWRGRRRRDNRRRDRNRRGRRRDD		 ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input 		0.721 0.721
RELA
M09351_2.00 		Homo sapiens
NWGGGRHWTTCCMV
BKGGAAWDYCCCWN		 Misc
Kulakovskiy et al.(2013)
TF65_HUMAN.H11MO.0.A 		0.721 0.721
Rela
M09355_2.00 		Mus musculus
KGGRVTTYCCM
KGGRAABYCCM		 Misc
Kulakovskiy et al.(2013)
TF65_MOUSE.H11MO.0.A 		0.721 0.721
RELA
M09626_2.00 		Homo sapiens
DGGGRVWTTCCM
KGGAAWBYCCCH		 Misc
Heinz et al.(2010)
GM12787-p65_GSE19485 		0.721 0.721
RELA
M11237_2.00 		Homo sapiens
BGGRVTTTCC
GGAAABYCCV		 Transfac
Matys et al.(2006)
V$NFKAPPAB65_01 		0.721 0.721
RELA
M11238_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_02 		0.721 0.721
RELA
M11239_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_03 		0.721 0.721
RELA
M11240_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_04 		0.721 0.721
RELA
M11241_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_05 		0.721 0.721
RELA
M11242_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_Q6 		0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Tal_R005550 Rel 3 45

Links

Other Rel family TFs
Other Tyto alba TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01510 Capronia coronata A1O1_01510 N 0.000
A1O5_00212 Cladophialophora psammophila A1O5_00212 N 0.000
HMPREF1120_05946 Exophiala dermatitidis HMPREF1120_05946 N 0.000
JL09_g5821 Pichia kudriavzevii JL09_g5821 N 0.000
Kpol_449p11 Vanderwaltozyma polyspora Kpol_449p11 N 0.000
PV05_04579 Exophiala xenobiotica PV05_04579 N 0.000
PV09_05539 Verruconis gallopava PV09_05539 N 0.000
PV11_00229 Exophiala sideris PV11_00229 N 0.000
Z517_09459 Fonsecaea pedrosoi Z517_09459 N 0.000
Z519_00213 Cladophialophora bantiana Z519_00213 N 0.000