ENSAMXG00000014807 (Astyanax mexicanus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSAMXG00000014807 T318129_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.784 0.949
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.784 0.949
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.784 0.949
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.784 0.949
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.716 0.646
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.716 0.646
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.716 0.646
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.716 0.646
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.716 0.646
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.716 0.646
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.716 0.646
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.716 0.646
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.716 0.646
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.716 0.646
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.716 0.646
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.716 0.646
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.716 0.646
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.716 0.646
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.716 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000015239 RFX 112 190

Links

Other RFX family TFs
Other Astyanax mexicanus TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cebpd Mus musculus BAE29047.1 D 0.000
Cmyd_10014862 Chelonia mydas Cmyd_10014862 I 0.000
CEBPD Anolis carolinensis ENSACAG00000012009 I 0.000
ENSAMXG00000025594 Astyanax mexicanus ENSAMXG00000025594 I 0.000
ENSAPLG00000002650 Anas platyrhynchos ENSAPLG00000002650 I 0.000
CEBPD Callithrix jacchus ENSCJAG00000013678 I 0.000
ENSCPOG00000025482 Cavia porcellus ENSCPOG00000025482 I 0.000
cebpd Danio rerio ENSDARG00000087303 I 0.000
CEBPD Dasypus novemcinctus ENSDNOG00000025666 I 0.000
ENSFALG00000014184 Ficedula albicollis ENSFALG00000014184 I 0.000
CEBPD Homo sapiens ENSG00000221869 D 0.000
cebpd Gasterosteus aculeatus ENSGACG00000017927 I 0.000
ENSGMOG00000002585 Gadus morhua ENSGMOG00000002585 I 0.000
ENSLACG00000015084 Latimeria chalumnae ENSLACG00000015084 I 0.000
ENSLOCG00000017816 Lepisosteus oculatus ENSLOCG00000017816 I 0.000
CEBPD Macaca mulatta ENSMMUG00000013151 I 0.000
CEBPD Monodelphis domestica ENSMODG00000010525 I 0.000
ENSMPUG00000001146 Mustela putorius furo ENSMPUG00000001146 I 0.000
ENSOANG00000007261 Ornithorhynchus anatinus ENSOANG00000007261 I 0.000
ENSOARG00000011169 Ovis aries ENSOARG00000011169 I 0.000
ENSOCUG00000025135 Oryctolagus cuniculus ENSOCUG00000025135 I 0.000
CEBPD Otolemur garnettii ENSOGAG00000030449 I 0.000
ENSONIG00000021429 Oreochromis niloticus ENSONIG00000021429 I 0.000
ENSPANG00000024953 Papio anubis ENSPANG00000024953 I 0.000
ENSPFOG00000020361 Poecilia formosa ENSPFOG00000020361 I 0.000
ENSPPYG00000018572 Pongo abelii ENSPPYG00000018572 I 0.000
CEBPD Pan troglodytes ENSPTRG00000042020 I 0.000
Cebpd Rattus norvegicus ENSRNOG00000050869 D 0.000
ENSSSCG00000006276 Sus scrofa ENSSSCG00000006276 I 0.000
ENSSTOG00000021236 Ictidomys tridecemlineatus ENSSTOG00000021236 I 0.000
CEBPD Taeniopygia guttata ENSTGUG00000010839 I 0.000
cebpd Tetraodon nigroviridis ENSTNIG00000000222 I 0.000
ENSXMAG00000019437 Xiphophorus maculatus ENSXMAG00000019437 I 0.000
Pvit_15371 Pogona vitticeps Pvit_15371 I 0.000
cebpd.L Xenopus laevis XB-GENE-17330367 I 0.000
cebpd Xenopus tropicalis XB-GENE-853588 I 0.000
cebpd.S Xenopus laevis XB-GENE-866497 I 0.000