ENSPSIG00000018073 (Pelodiscus sinensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPSIG00000018073 T318471_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.744 0.763
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.744 0.763
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.744 0.763
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.744 0.763
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.744 0.763
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.744 0.763
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.744 0.763
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.744 0.763
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.744 0.763
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.744 0.763
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.744 0.763
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.744 0.763
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.744 0.763
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.744 0.763
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.744 0.763
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.699 0.632
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.699 0.632
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.699 0.632
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.699 0.632
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000020414 RFX 91 166

Links

Other RFX family TFs
Other Pelodiscus sinensis TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_088710 Acremonium chrysogenum ACRE_088710 I 0.000
CCM_00913 Cordyceps militaris CCM_00913 I 0.000
CFIO01_02322 Colletotrichum fioriniae CFIO01_02322 I 0.000
CGGC5_10205 Colletotrichum gloeosporioides CGGC5_10205 I 0.000
CH063_07213 Colletotrichum higginsianum CH063_07213 I 0.000
CMQ_2744 Grosmannia clavigera CMQ_2744 I 0.000
Cob_02185 Colletotrichum orbiculare Cob_02185 I 0.000
CSUB01_08337 Colletotrichum sublineola CSUB01_08337 I 0.000
e_gw1.5.1042.1 Nectria haematococca e_gw1.5.1042.1 I 0.000
FFUJ_07449 Fusarium fujikuroi FFUJ_07449 I 0.000
FGRRES_17309 Fusarium graminearum FGRRES_17309 I 0.000
FOXG_05408 Fusarium oxysporum FOXG_05408 I 0.000
FPSE_00499 Fusarium pseudograminearum FPSE_00499 I 0.000
FVEG_02723 Fusarium verticillioides FVEG_02723 I 0.000
GLRG_07449 Colletotrichum graminicola GLRG_07449 I 0.000
HMPREF1624_07464 Sporothrix schenckii HMPREF1624_07464 I 0.000
MAC_03900 Metarhizium acridum MAC_03900 I 0.000
MAJ_05180 Metarhizium majus MAJ_05180 I 0.000
MAM_05041 Metarhizium album MAM_05041 I 0.000
MBR_04335 Metarhizium brunneum MBR_04335 I 0.000
MGU_05623 Metarhizium guizhouense MGU_05623 I 0.000
NechaG40581 Fusarium solani NechaG40581 I 0.000
NEUTE1DRAFT_120420 Neurospora tetrasperma NEUTE1DRAFT_120420 I 0.000
S40288_07421 Stachybotrys chartarum S40288_07421 I 0.000
SAPIO_CDS8637 Scedosporium apiospermum SAPIO_CDS8637 I 0.000
SPBR_06325 Sporothrix brasiliensis SPBR_06325 I 0.000
TRIATDRAFT_161814 Trichoderma atroviride TRIATDRAFT_161814 I 0.000
TRIREDRAFT_49372 Trichoderma reesei TRIREDRAFT_49372 I 0.000
TRIVIDRAFT_122714 Trichoderma virens TRIVIDRAFT_122714 I 0.000
UV8b_4097 Ustilaginoidea virens UV8b_4097 I 0.000
VHEMI00437 Torrubiella hemipterigena VHEMI00437 I 0.000
X797_011716 Metarhizium robertsii X797_011716 I 0.000