Rfx7 (Rattus norvegicus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSRNOG00000060367 T318493_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.793 1.000
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.793 1.000
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.793 1.000
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.793 1.000
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.710 0.620
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.710 0.620
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.710 0.620
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.710 0.620
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.710 0.620
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.710 0.620
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.710 0.620
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.710 0.620
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.710 0.620
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.710 0.620
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.710 0.620
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.710 0.620
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.710 0.620
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.710 0.620
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000069427 RFX 105 183

Links

Other RFX family TFs
Other Rattus norvegicus TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002544 Ricinus communis 30068.m002544 I 0.000
AMTR_s00005p00268890 Amborella trichopoda AMTR_s00005p00268890 I 0.000
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I 0.000
Aquca_028_00141 Aquilegia coerulea Aquca_028_00141 I 0.000
MYB12 Arabidopsis thaliana AT2G47460 I 0.000
MYB11 Arabidopsis thaliana AT3G62610 I 0.000
MYB6 Arabidopsis thaliana AT4G09460 I 0.000
MYB29 Arabidopsis thaliana AT5G07690 I 0.000
MYB111 Arabidopsis thaliana AT5G49330 D 0.000
BGIOSGA003345 Oryza indica BGIOSGA003345 I 0.000
BGIOSGA003347 Oryza indica BGIOSGA003347 I 0.000
BGIOSGA010900 Oryza indica BGIOSGA010900 I 0.000
Bo1g006820 Brassica oleracea Bo1g006820 I 0.000
Bo2g161590 Brassica oleracea Bo2g161590 I 0.000
Bo3g004500 Brassica oleracea Bo3g004500 I 0.000
Bo3g039690 Brassica oleracea Bo3g039690 I 0.000
Bo4g004500 Brassica oleracea Bo4g004500 I 0.000
Bo7g092680 Brassica oleracea Bo7g092680 I 0.000
Bo7g117140 Brassica oleracea Bo7g117140 I 0.000
Bo9g014610 Brassica oleracea Bo9g014610 I 0.000
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.000
Bostr.13158s0261 Boechera stricta Bostr.13158s0261 I 0.000
Bostr.15774s0064 Boechera stricta Bostr.15774s0064 I 0.000
Bostr.25463s0384 Boechera stricta Bostr.25463s0384 I 0.000
Bostr.25993s0011 Boechera stricta Bostr.25993s0011 I 0.000
Bra000453 Brassica rapa Bra000453 I 0.000
Bra011576 Brassica rapa Bra011576 I 0.000
Bra017685 Brassica rapa Bra017685 I 0.000
Bra035929 Brassica rapa Bra035929 I 0.000
Bra036145 Brassica rapa Bra036145 I 0.000
Bra037419 Brassica rapa Bra037419 I 0.000
BRADI1G64687 Brachypodium distachyon BRADI1G64687 I 0.000
BRADI2G11676 Brachypodium distachyon BRADI2G11676 I 0.000
Cagra.13170s0007 Capsella grandiflora Cagra.13170s0007 I 0.000
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.000
Cagra.6296s0007 Capsella grandiflora Cagra.6296s0007 I 0.000
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.000
Carubv10019345m.g Capsella rubella Carubv10019345m.g I 0.000
Carubv10024801m.g Capsella rubella Carubv10024801m.g I 0.000
Carubv10026694m.g Capsella rubella Carubv10026694m.g I 0.000
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.000
cassava29110.valid.m1 Manihot esculenta cassava29110.valid.m1 I 0.000
cassava34176.m1 Manihot esculenta cassava34176.m1 I 0.000
cassava40469.m1 Manihot esculenta cassava40469.m1 I 0.000
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I 0.000
Ca_03498 Cicer arietinum Ca_03498 I 0.000
chr5.CM0239.580.nc Lotus japonicus chr5.CM0239.580.nc I 0.000
Ciclev10005376m.g Citrus clementina Ciclev10005376m.g I 0.000
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.000
Ciclev10021571m.g Citrus clementina Ciclev10021571m.g I 0.000
Cla009418 Citrullus lanatus Cla009418 I 0.000
Cla017646 Citrullus lanatus Cla017646 I 0.000
Cla022107 Citrullus lanatus Cla022107 I 0.000
Cucsa.069500 Cucumis sativus Cucsa.069500 I 0.000
Cucsa.252700 Cucumis sativus Cucsa.252700 I 0.000
Eucgr.A00200 Eucalyptus grandis Eucgr.A00200 I 0.000
Eucgr.B00865 Eucalyptus grandis Eucgr.B00865 I 0.000
Eucgr.B02896 Eucalyptus grandis Eucgr.B02896 I 0.000
Eucgr.D02390 Eucalyptus grandis Eucgr.D02390 I 0.000
Eucgr.E01031 Eucalyptus grandis Eucgr.E01031 I 0.000
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.000
Eucgr.G02195 Eucalyptus grandis Eucgr.G02195 I 0.000
Eucgr.H01058 Eucalyptus grandis Eucgr.H01058 I 0.000
evm.TU.supercontig_18.11 Carica papaya evm.TU.supercontig_18.11 I 0.000
F775_11235 Aegilops tauschii F775_11235 I 0.000
ATMYB11 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002710 I 0.000
HOS10 Arabidopsis lyrata fgenesh2_kg.1__3635__AT1G35515.1 I 0.000
MYB12 Arabidopsis lyrata fgenesh2_kg.4__2983__AT2G47460.1 I 0.000
AtMYB6 Arabidopsis lyrata fgenesh2_kg.6__2929__AT4G09460.1 I 0.000
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.000
gene02324-v1.0-hybrid Fragaria vesca gene02324-v1.0-hybrid I 0.000
gene05167-v1.0-hybrid Fragaria vesca gene05167-v1.0-hybrid I 0.000
gene09406-v1.0-hybrid Fragaria vesca gene09406-v1.0-hybrid I 0.000
gene18691-v1.0-hybrid Fragaria vesca gene18691-v1.0-hybrid I 0.000
gene25098-v1.0-hybrid Fragaria vesca gene25098-v1.0-hybrid I 0.000
GLYMA02G01740 Glycine max GLYMA02G01740 I 0.000
GLYMA03G37640 Glycine max GLYMA03G37640 I 0.000
GLYMA07G33960 Glycine max GLYMA07G33960 I 0.000
GLYMA07G37142 Glycine max GLYMA07G37142 I 0.000
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.000
GLYMA10G01801 Glycine max GLYMA10G01801 I 0.000
GLYMA15G15400 Glycine max GLYMA15G15400 I 0.000
GLYMA17G03480 Glycine max GLYMA17G03480 I 0.000
GLYMA20G01610 Glycine max GLYMA20G01610 I 0.000
Gorai.001G143200 Gossypium raimondii Gorai.001G143200 I 0.000
Gorai.002G180300 Gossypium raimondii Gorai.002G180300 I 0.000
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.000
Gorai.005G162600 Gossypium raimondii Gorai.005G162600 I 0.000
Gorai.007G124000 Gossypium raimondii Gorai.007G124000 I 0.000
Gorai.007G179300 Gossypium raimondii Gorai.007G179300 I 0.000
Gorai.008G126700 Gossypium raimondii Gorai.008G126700 I 0.000
Gorai.008G141000 Gossypium raimondii Gorai.008G141000 I 0.000
Gorai.011G195100 Gossypium raimondii Gorai.011G195100 I 0.000
GRMZM2G022686 Zea mays GRMZM2G022686 I 0.000
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.000
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.000
GRMZM2G057027 Zea mays GRMZM2G057027 I 0.000
GRMZM2G084583 Zea mays GRMZM2G084583 I 0.000
GRMZM2G084799 Zea mays GRMZM2G084799 I 0.000
GSMUA_Achr10G16010_001 Musa acuminata GSMUA_Achr10G16010_001 I 0.000
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.000
GSMUA_Achr3G21000_001 Musa acuminata GSMUA_Achr3G21000_001 I 0.000
GSMUA_Achr5G21250_001 Musa acuminata GSMUA_Achr5G21250_001 I 0.000
GSMUA_Achr6G07260_001 Musa acuminata GSMUA_Achr6G07260_001 I 0.000
GSMUA_Achr6G12930_001 Musa acuminata GSMUA_Achr6G12930_001 I 0.000
GSMUA_Achr8G10470_001 Musa acuminata GSMUA_Achr8G10470_001 I 0.000
GSMUA_Achr9G08600_001 Musa acuminata GSMUA_Achr9G08600_001 I 0.000
GSMUA_AchrUn_randomG12700_001 Musa acuminata GSMUA_AchrUn_randomG12700_001 I 0.000
GSMUA_AchrUn_randomG16400_001 Musa acuminata GSMUA_AchrUn_randomG16400_001 I 0.000
GSMUA_AchrUn_randomG28780_001 Musa acuminata GSMUA_AchrUn_randomG28780_001 I 0.000
LPERR03G12690 Leersia perrieri LPERR03G12690 I 0.000
Lus10010273.g Linum usitatissimum Lus10010273.g I 0.000
Lus10016855.g Linum usitatissimum Lus10016855.g I 0.000
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.000
Lus10036336.g Linum usitatissimum Lus10036336.g I 0.000
MDP0000119725 Malus domestica MDP0000119725 I 0.000
MDP0000159011 Malus domestica MDP0000159011 I 0.000
MDP0000250597 Malus domestica MDP0000250597 I 0.000
MDP0000607330 Malus domestica MDP0000607330 I 0.000
MDP0000915330 Malus domestica MDP0000915330 I 0.000
mgf003233m Mimulus guttatus mgf003233m I 0.000
mgf003913m Mimulus guttatus mgf003913m I 0.000
mgf012733m Mimulus guttatus mgf012733m I 0.000
mgf015598m Mimulus guttatus mgf015598m I 0.000
MLOC_57220 Hordeum vulgare MLOC_57220 I 0.000
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.000
MTR_4g121460 Medicago truncatula MTR_4g121460 I 0.000
MTR_7g109320 Medicago truncatula MTR_7g109320 I 0.000
OB01G22640 Oryza brachyantha OB01G22640 I 0.000
OB03G24320 Oryza brachyantha OB03G24320 I 0.000
OB03G30160 Oryza brachyantha OB03G30160 I 0.000
OBART01G11800 Oryza barthii OBART01G11800 I 0.000
OBART03G14380 Oryza barthii OBART03G14380 I 0.000
OGLUM01G14390 Oryza glumaepatula OGLUM01G14390 I 0.000
OGLUM03G14490 Oryza glumaepatula OGLUM03G14490 I 0.000
OMERI03G13130 Oryza meridionalis OMERI03G13130 I 0.000
ONIVA01G15380 Oryza nivara ONIVA01G15380 I 0.000
ONIVA03G15280 Oryza nivara ONIVA03G15280 I 0.000
OPUNC03G13890 Oryza punctata OPUNC03G13890 I 0.000
orange1.1g014829m.g Citrus sinensis orange1.1g014829m.g I 0.000
orange1.1g040841m.g Citrus sinensis orange1.1g040841m.g I 0.000
orange1.1g041081m.g Citrus sinensis orange1.1g041081m.g I 0.000
ORGLA01G0099200 Oryza glaberrima ORGLA01G0099200 I 0.000
ORGLA03G0138900 Oryza glaberrima ORGLA03G0138900 I 0.000
ORUFI03G15030 Oryza rufipogon ORUFI03G15030 I 0.000
OS01G0305900 Oryza sativa OS01G0305900 I 0.000
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I 0.000
Pavir.J00442 Panicum virgatum Pavir.J00442 I 0.000
PDK_20s1310471g002 Phoenix dactylifera PDK_20s1310471g002 I 0.000
PGSC0003DMG400004371 Solanum tuberosum PGSC0003DMG400004371 I 0.000
PGSC0003DMG400007304 Solanum tuberosum PGSC0003DMG400007304 I 0.000
PGSC0003DMG400009033 Solanum tuberosum PGSC0003DMG400009033 I 0.000
PGSC0003DMG400030548 Solanum tuberosum PGSC0003DMG400030548 I 0.000
PK05970.1 Cannabis sativa PK05970.1 I 0.000
PK06182.1 Cannabis sativa PK06182.1 D 0.000
PK11717.1 Cannabis sativa PK11717.1 I 0.000
PK14784.1 Cannabis sativa PK14784.1 I 0.000
PK16958.1 Cannabis sativa PK16958.1 I 0.000
Pm008294 Prunus mume Pm008294 I 0.000
Pm014372 Prunus mume Pm014372 I 0.000
Pm018338 Prunus mume Pm018338 I 0.000
Pm025102 Prunus mume Pm025102 I 0.000
Pm029185 Prunus mume Pm029185 I 0.000
POPTR_0001s11100 Populus trichocarpa POPTR_0001s11100 I 0.000
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I 0.000
POPTR_0003s14420 Populus trichocarpa POPTR_0003s14420 I 0.000
POPTR_0003s14430 Populus trichocarpa POPTR_0003s14430 I 0.000
POPTR_0008s12750 Populus trichocarpa POPTR_0008s12750 I 0.000
POPTR_0010s12420 Populus trichocarpa POPTR_0010s12420 I 0.000
POPTR_0010s15090 Populus trichocarpa POPTR_0010s15090 I 0.000
POPTR_0013s11360 Populus trichocarpa POPTR_0013s11360 I 0.000
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.000
POPTR_0017s02990 Populus trichocarpa POPTR_0017s02990 I 0.000
POPTR_0019s11090 Populus trichocarpa POPTR_0019s11090 I 0.000
PRUPE_ppa004560mg Prunus persica PRUPE_ppa004560mg I 0.000
PRUPE_ppa007594mg Prunus persica PRUPE_ppa007594mg I 0.000
PRUPE_ppa009439mg Prunus persica PRUPE_ppa009439mg I 0.000
PRUPE_ppa010716mg Prunus persica PRUPE_ppa010716mg I 0.000
PRUPE_ppa010846mg Prunus persica PRUPE_ppa010846mg I 0.000
PRUPE_ppa011954mg Prunus persica PRUPE_ppa011954mg I 0.000
SapurV1A.0003s0900 Salix purpurea SapurV1A.0003s0900 I 0.000
SapurV1A.0035s0030 Salix purpurea SapurV1A.0035s0030 I 0.000
SapurV1A.0035s0040 Salix purpurea SapurV1A.0035s0040 I 0.000
SapurV1A.0050s0720 Salix purpurea SapurV1A.0050s0720 I 0.000
SapurV1A.0059s0150 Salix purpurea SapurV1A.0059s0150 I 0.000
SapurV1A.0059s0160 Salix purpurea SapurV1A.0059s0160 I 0.000
SapurV1A.0102s0340 Salix purpurea SapurV1A.0102s0340 I 0.000
SapurV1A.0120s0010 Salix purpurea SapurV1A.0120s0010 I 0.000
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I 0.000
SapurV1A.0163s0150 Salix purpurea SapurV1A.0163s0150 I 0.000
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.000
SapurV1A.0390s0200 Salix purpurea SapurV1A.0390s0200 I 0.000
SapurV1A.1730s0020 Salix purpurea SapurV1A.1730s0020 I 0.000
Sb01g037670 Sorghum bicolor Sb01g037670 I 0.000
Sb03g012550 Sorghum bicolor Sb03g012550 I 0.000
MYB111 Arabidopsis lyrata scaffold_801313.1 I 0.000
Si002107m.g Setaria italica Si002107m.g I 0.000
Si039538m.g Setaria italica Si039538m.g I 0.000
Solyc01g079620.2 Solanum lycopersicum Solyc01g079620.2 I 0.000
Solyc05g008250.1 Solanum lycopersicum Solyc05g008250.1 I 0.000
Solyc06g009710.2 Solanum lycopersicum Solyc06g009710.2 I 0.000
Solyc12g049350.1 Solanum lycopersicum Solyc12g049350.1 I 0.000
TCM_004777 Theobroma cacao TCM_004777 I 0.000
TCM_010839 Theobroma cacao TCM_010839 I 0.000
TCM_019261 Theobroma cacao TCM_019261 I 0.000
TCM_021317 Theobroma cacao TCM_021317 I 0.000
TCM_021318 Theobroma cacao TCM_021318 I 0.000
Thhalv10001498m.g Eutrema salsugineum Thhalv10001498m.g I 0.000
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.000
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I 0.000
Thhalv10006080m.g Eutrema salsugineum Thhalv10006080m.g I 0.000
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.000
Thhalv10025926m.g Eutrema salsugineum Thhalv10025926m.g I 0.000
Traes_1DS_711044AD5 Triticum aestivum Traes_1DS_711044AD5 I 0.000
Traes_4AS_3883DC244 Triticum aestivum Traes_4AS_3883DC244 I 0.000
Traes_4DL_967152326 Triticum aestivum Traes_4DL_967152326 I 0.000
TRIUR3_05136 Triticum urartu TRIUR3_05136 I 0.000
TRIUR3_31689 Triticum urartu TRIUR3_31689 I 0.000
VIT_01s0011g04760 Vitis vinifera VIT_01s0011g04760 I 0.000
VIT_05s0077g01360 Vitis vinifera VIT_05s0077g01360 I 0.000
VIT_07s0005g01210 Vitis vinifera VIT_07s0005g01210 I 0.000
VIT_15s0046g00170 Vitis vinifera VIT_15s0046g00170 I 0.000
VIT_17s0000g02650 Vitis vinifera VIT_17s0000g02650 I 0.000
VIT_17s0000g02660 Vitis vinifera VIT_17s0000g02660 I 0.000