ENSSHAG00000009393 (Sarcophilus harrisii)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSSHAG00000009393 T318502_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.794 0.987
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.719 0.709
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.719 0.709
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.719 0.709
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.719 0.709
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.719 0.709
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.719 0.709
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.688 0.608
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.688 0.608
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.688 0.608
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.688 0.608
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.688 0.608
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.688 0.608
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.688 0.608
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.688 0.608
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.688 0.608
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.688 0.608
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.688 0.608
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.688 0.608
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.688 0.608
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.688 0.608
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.688 0.608
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.688 0.608
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.688 0.608
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.687 0.595
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.686 0.595
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.686 0.570
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.686 0.582
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.686 0.582
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.686 0.582
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.686 0.582
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.686 0.582
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.682 0.608
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.682 0.608
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.682 0.608
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.682 0.608
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.681 0.595
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.681 0.595
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.681 0.595
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.681 0.595
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.681 0.595
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.681 0.595
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.681 0.595
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.681 0.595
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.681 0.595
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.681 0.544
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.680 0.595
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.680 0.595
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.680 0.595
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.680 0.595
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.680 0.595
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.680 0.595
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.679 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSHAP00000010896 RFX 116 194
ENSSHAP00000010897 RFX 116 194

Links

Other RFX family TFs
Other Sarcophilus harrisii TFs

565 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_08282 Capronia coronata A1O1_08282 N 0.000
A1O5_00025 Cladophialophora psammophila A1O5_00025 N 0.000
A1O7_03671 Cladophialophora yegresii A1O7_03671 N 0.000
A1O9_03542 Exophiala aquamarina A1O9_03542 I 0.000
A1O9_13001 Exophiala aquamarina A1O9_13001 I 0.000
BBA_08191 Beauveria bassiana BBA_08191 I 0.000
Bcin09g02560 Botrytis cinerea Bcin09g02560 I 0.000
BDDG_04796 Blastomyces dermatitidis BDDG_04796 I 0.000
BGHDH14_bgh01821 Blumeria graminis BGHDH14_bgh01821 I 0.000
ACLA_079920 Aspergillus clavatus CADACLAG00007683 I 0.000
AFUA_2G08040 Aspergillus fumigatus CADAFUAG00004446 I 0.000
ANIA_05849 Aspergillus nidulans CADANIAG00007192 I 0.000
CADAORAG00005589 Aspergillus oryzae CADAORAG00005589 I 0.000
NFIA_024310 Neosartorya fischeri CADNFIAG00002261 I 0.000
NFIA_083690 Neosartorya fischeri CADNFIAG00006940 I 0.000
CCM_00913 Cordyceps militaris CCM_00913 I 0.000
CFIO01_02322 Colletotrichum fioriniae CFIO01_02322 I 0.000
CGGC5_10205 Colletotrichum gloeosporioides CGGC5_10205 I 0.000
CH063_07213 Colletotrichum higginsianum CH063_07213 I 0.000
CHGG_00505 Chaetomium globosum CHGG_00505 I 0.000
CIMG_00917 Coccidioides immitis CIMG_00917 N 0.000
CMQ_2744 Grosmannia clavigera CMQ_2744 I 0.000
Cob_02185 Colletotrichum orbiculare Cob_02185 I 0.000
CPC735_054240 Coccidioides posadasii CPC735_054240 N 0.000
CSUB01_08337 Colletotrichum sublineola CSUB01_08337 I 0.000
CSUB01_09138 Colletotrichum sublineola CSUB01_09138 I 0.000
DRE_04286 Drechslerella stenobrocha DRE_04286 I 0.000
EPUS_07292 Endocarpon pusillum EPUS_07292 N 0.000
estExt_fgenesh1_pg.C_70327 Cryphonectria parasitica estExt_fgenesh1_pg.C_70327 I 0.000
estExt_fgenesh3_pm.C_140174 Neurospora discreta estExt_fgenesh3_pm.C_140174 I 0.000
EURHEDRAFT_513914 Aspergillus ruber EURHEDRAFT_513914 I 0.000
EV44_g6283 Erysiphe necator EV44_g6283 I 0.000
e_gw1.5.1042.1 Nectria haematococca e_gw1.5.1042.1 I 0.000
F503_05733 Ophiostoma piceae uamh F503_05733 I 0.000
FFUJ_07449 Fusarium fujikuroi FFUJ_07449 I 0.000
FGRRES_17309 Fusarium graminearum FGRRES_17309 I 0.000
FOXG_05408 Fusarium oxysporum FOXG_05408 I 0.000
FOXG_14277 Fusarium oxysporum FOXG_14277 I 0.000
FPSE_00499 Fusarium pseudograminearum FPSE_00499 I 0.000
FVEG_02723 Fusarium verticillioides FVEG_02723 I 0.000
G647_04707 Cladophialophora carrionii G647_04707 N 0.000
GLRG_07449 Colletotrichum graminicola GLRG_07449 I 0.000
GSTUM_00005598001 Tuber melanosporum GSTUM_00005598001 I 0.000
H072_8333 Dactylellina haptotyla H072_8333 I 0.000
H101_07435 Trichophyton interdigitale H101_07435 I 0.000
HCBG_04625 Histoplasma capsulatum HCBG_04625 I 0.000
HMPREF1120_05352 Exophiala dermatitidis HMPREF1120_05352 N 0.000
HMPREF1541_04418 Cyphellophora europaea HMPREF1541_04418 N 0.000
HMPREF1624_07464 Sporothrix schenckii HMPREF1624_07464 I 0.000
MBM_05016 Marssonina brunnea MBM_05016 I 0.000
MCYG_00297 Microsporum canis MCYG_00297 I 0.000
MCYG_00297 Arthroderma otae MCYG_00297 I 0.000
MGG_09263 Magnaporthe oryzae MGG_09263 I 0.000
MGYG_00861 Microsporum gypseum MGYG_00861 I 0.000
NCU04663 Neurospora crassa NCU04663 D 0.000
NechaG40581 Fusarium solani NechaG40581 I 0.000
OIDMADRAFT_112327 Oidiodendron maius OIDMADRAFT_112327 I 0.000
PAAG_08490 Paracoccidioides sp lutzii PAAG_08490 I 0.000
PABG_04642 Paracoccidioides brasiliensis PABG_04642 I 0.000
PDE_04102 Penicillium oxalicum PDE_04102 I 0.000
PDIP_85460 Penicillium digitatum PDIP_85460 I 0.000
PEX1_083360 Penicillium expansum PEX1_083360 I 0.000
PFICI_07122 Pestalotiopsis fici PFICI_07122 I 0.000
PITC_041810 Penicillium italicum PITC_041810 I 0.000
PMAA_070340 Penicillium marneffei PMAA_070340 I 0.000
PMAA_070340 Talaromyces marneffei PMAA_070340 I 0.000
PV04_03866 Capronia semiimmersa PV04_03866 N 0.000
PV05_05583 Exophiala xenobiotica PV05_05583 N 0.000
PV06_00266 Exophiala oligosperma PV06_00266 N 0.000
PV07_06437 Cladophialophora immunda PV07_06437 I 0.000
PV08_04106 Exophiala spinifera PV08_04106 N 0.000
PV10_05308 Exophiala mesophila PV10_05308 N 0.000
PV11_00815 Exophiala sideris PV11_00815 N 0.000
PVAR5_8925 Byssochlamys spectabilis PVAR5_8925 I 0.000
SAPIO_CDS8637 Scedosporium apiospermum SAPIO_CDS8637 I 0.000
SBOR_3621 Sclerotinia borealis SBOR_3621 I 0.000
SMAC_08342 Sordaria macrospora SMAC_08342 I 0.000
SPBR_06325 Sporothrix brasiliensis SPBR_06325 I 0.000
SS1G_05371 Sclerotinia sclerotiorum SS1G_05371 I 0.000
TEQG_02692 Trichophyton equinum TEQG_02692 I 0.000
TESG_02247 Trichophyton tonsurans TESG_02247 I 0.000
THITE_40970 Thielavia terrestris THITE_40970 I 0.000
TSTA_090670 Talaromyces stipitatus TSTA_090670 I 0.000
U727_0043004001 Penicillium solitum U727_0043004001 I 0.000
UREG_00865 Uncinocarpus reesii UREG_00865 N 0.000
VHEMI03393 Torrubiella hemipterigena VHEMI03393 I 0.000
Z517_10110 Fonsecaea pedrosoi Z517_10110 N 0.000
Z518_01742 Rhinocladiella mackenziei Z518_01742 N 0.000
Z519_00024 Cladophialophora bantiana Z519_00024 N 0.000