rfx7 (Tetraodon nigroviridis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTNIG00000009322 T318536_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.752 0.835
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.752 0.835
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.752 0.835
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.752 0.835
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.690 0.557
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.690 0.557
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.690 0.557
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.690 0.557
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.690 0.557
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.690 0.557
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.690 0.557
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.690 0.557
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.690 0.557
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.690 0.557
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.690 0.557
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.690 0.557
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.690 0.557
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.690 0.557
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.690 0.557
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000012189 RFX 5 85

Links

Other RFX family TFs
Other Tetraodon nigroviridis TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00076g415 Arthrobotrys oligospora AOL_s00076g415 I 0.000
AUEXF2481DRAFT_112381 Aureobasidium subglaciale AUEXF2481DRAFT_112381 N 0.000
BAUCODRAFT_29699 Baudoinia compniacensis BAUCODRAFT_29699 N 0.000
COCC4DRAFT_69191 Bipolaris maydis COCC4DRAFT_69191 N 0.000
COCCADRAFT_22830 Bipolaris zeicola COCCADRAFT_22830 N 0.000
COCMIDRAFT_32511 Bipolaris oryzae COCMIDRAFT_32511 N 0.000
COCSADRAFT_201838 Bipolaris sorokiniana COCSADRAFT_201838 N 0.000
COCVIDRAFT_104413 Bipolaris victoriae COCVIDRAFT_104413 N 0.000
DOTSEDRAFT_67989 Dothistroma septosporum DOTSEDRAFT_67989 N 0.000
DRE_06459 Drechslerella stenobrocha DRE_06459 I 0.000
EPUS_02316 Endocarpon pusillum EPUS_02316 N 0.000
estExt_Genewise1.C_12121 Mycosphaerella fijiensis estExt_Genewise1.C_12121 N 0.000
estExt_Genewise1.C_60195 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60195 N 0.000
GMDG_05434 Pseudogymnoascus destructans GMDG_05434 N 0.000
GSTUM_00012254001 Tuber melanosporum GSTUM_00012254001 I 0.000
gw1.1.2094.1 Mycosphaerella graminicola gw1.1.2094.1 N 0.000
H072_5429 Dactylellina haptotyla H072_5429 I 0.000
LEMA_P051420.1 Leptosphaeria maculans LEMA_P051420.1 N 0.000
M437DRAFT_59053 Aureobasidium melanogenum M437DRAFT_59053 N 0.000
M438DRAFT_299670 Aureobasidium pullulans M438DRAFT_299670 N 0.000
MCYG_04594 Arthroderma otae MCYG_04594 I 0.000
MCYG_04594 Microsporum canis MCYG_04594 I 0.000
MPH_03457 Macrophomina phaseolina MPH_03457 N 0.000
MYCFIDRAFT_95483 Pseudocercospora fijiensis MYCFIDRAFT_95483 N 0.000
Mycgr3G20893 Zymoseptoria tritici Mycgr3G20893 N 0.000
PTRG_00830 Pyrenophora triticirepentis PTRG_00830 N 0.000
PV09_02303 Verruconis gallopava PV09_02303 N 0.000
SEPMUDRAFT_145995 Sphaerulina musiva SEPMUDRAFT_145995 N 0.000
SETTUDRAFT_181417 Setosphaeria turcica SETTUDRAFT_181417 N 0.000
UCRNP2_1954 Neofusicoccum parvum UCRNP2_1954 N 0.000
V499_09210 Pseudogymnoascus pannorum V499_09210 N 0.000
W97_00606 Coniosporium apollinis W97_00606 N 0.000