RFX7 (Tetraodon nigroviridis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTNIG00000013706 T318539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.771 0.899
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.771 0.899
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.771 0.899
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.771 0.899
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.712 0.633
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.712 0.633
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.712 0.633
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.712 0.633
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.712 0.633
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.712 0.633
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.712 0.633
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.712 0.633
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.712 0.633
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.712 0.633
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.712 0.633
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.712 0.633
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.712 0.633
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.712 0.633
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.712 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016706 RFX 8 87

Links

Other RFX family TFs
Other Tetraodon nigroviridis TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004852 Oryza indica BGIOSGA004852 N 0.000
BGIOSGA017964 Oryza indica BGIOSGA017964 N 0.000
BGIOSGA017965 Oryza indica BGIOSGA017965 N 0.000
BRADI2G55797 Brachypodium distachyon BRADI2G55797 N 0.000
F775_31610 Aegilops tauschii F775_31610 N 0.000
GRMZM2G027914 Zea mays GRMZM2G027914 N 0.000
GRMZM2G091201 Zea mays GRMZM2G091201 N 0.000
GRMZM2G143640 Zea mays GRMZM2G143640 N 0.000
GSMUA_Achr11G09110_001 Musa acuminata GSMUA_Achr11G09110_001 N 0.000
LPERR01G32800 Leersia perrieri LPERR01G32800 N 0.000
LPERR05G14380 Leersia perrieri LPERR05G14380 N 0.000
OB05G25990 Oryza brachyantha OB05G25990 N 0.000
OBART01G38220 Oryza barthii OBART01G38220 N 0.000
OGLUM01G42400 Oryza glumaepatula OGLUM01G42400 N 0.000
OGLUM05G19230 Oryza glumaepatula OGLUM05G19230 N 0.000
OGLUM05G19240 Oryza glumaepatula OGLUM05G19240 N 0.000
OMERI01G35110 Oryza meridionalis OMERI01G35110 N 0.000
ONIVA01G42920 Oryza nivara ONIVA01G42920 N 0.000
ONIVA05G19090 Oryza nivara ONIVA05G19090 N 0.000
OPUNC01G36990 Oryza punctata OPUNC01G36990 N 0.000
OPUNC05G16000 Oryza punctata OPUNC05G16000 N 0.000
ORGLA01G0320500 Oryza glaberrima ORGLA01G0320500 N 0.000
ORGLA05G0157700 Oryza glaberrima ORGLA05G0157700 N 0.000
ORUFI01G41590 Oryza rufipogon ORUFI01G41590 N 0.000
ORUFI05G19330 Oryza rufipogon ORUFI05G19330 N 0.000
ORUFI05G19340 Oryza rufipogon ORUFI05G19340 N 0.000
OS01G0863300 Oryza sativa OS01G0863300 N 0.000
OS05G0442400 Oryza sativa OS05G0442400 N 0.000
Pavir.Ea03744 Panicum virgatum Pavir.Ea03744 N 0.000
Pavir.J02275 Panicum virgatum Pavir.J02275 N 0.000
Pavir.J08778 Panicum virgatum Pavir.J08778 N 0.000
Sb03g040730 Sorghum bicolor Sb03g040730 N 0.000
Sb09g021770 Sorghum bicolor Sb09g021770 N 0.000
Si003047m.g Setaria italica Si003047m.g N 0.000
TRAES3BF019300020CFD_g Triticum aestivum TRAES3BF019300020CFD_g N 0.000