GA21990 (Drosophila pseudoobscura)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 FBgn0081975 T318585_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.685 0.519
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.685 0.519
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.685 0.519
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.685 0.519
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.672 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.672 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.672 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.672 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.672 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.672 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.672 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.672 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.672 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.672 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.672 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.672 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.672 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.672 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.672 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0300479 RFX 302 380

Links

Other RFX family TFs
Other Drosophila pseudoobscura TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013752 Aedes aegypti AAEL013752 I 0.766
AALB008384 Anopheles albimanus AALB008384 I 0.770
Aan_R010941 Calypte anna Aan_R010941 I 0.676
Aan_R011989 Calypte anna Aan_R011989 I 0.681
AARA004226 Anopheles arabiensis AARA004226 I 0.770
AATE016751 Anopheles atroparvus AATE016751 I 0.770
ACEP24602 Atta cephalotes ACEP24602 I 0.749
ACHR008891 Anopheles christyi ACHR008891 I 0.770
ACOM036649 Anopheles coluzzii ACOM036649 I 0.770
ACUA017169 Anopheles culicifacies ACUA017169 I 0.770
ADAC008404 Anopheles darlingi ADAC008404 I 0.770
ADIR010232 Anopheles dirus ADIR010232 I 0.770
AEPI006624 Anopheles epiroticus AEPI006624 I 0.770
AFAF011654 Anopheles farauti AFAF011654 I 0.772
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.676
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.681
AFUN011072 Anopheles funestus AFUN011072 I 0.770
AGAP013226 Anopheles gambiae AGAP013226 I 0.770
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.676
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.671
AMEC002251 Anopheles melas AMEC002251 I 0.770
AMEM009524 Anopheles merus AMEM009524 I 0.770
AMIN003942 Anopheles minimus AMIN003942 I 0.770
AQUA006869 Anopheles quadriannulatus AQUA006869 N 0.688
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.770
ASIS020285 Anopheles sinensis ASIS020285 I 0.770
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.770
A_01977 Schistosoma haematobium A_01977 I 0.703
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.726
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.676
CapteG131555 Capitella teleta CapteG131555 I 0.682
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.716
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.676
CGI_10016120 Crassostrea gigas CGI_10016120 I 0.654
CLEC011984 Cimex lectularius CLEC011984 I 0.731
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.767
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.767
csin102559 Clonorchis sinensis csin102559 I 0.695
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.735
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.706
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.706
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.685
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.674
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.672
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.685
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.678
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.685
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.686
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.685
RFX7 Bos taurus ENSBTAG00000000565 I 0.685
RFX5 Bos taurus ENSBTAG00000017580 I 0.672
RFX5 Canis familiaris ENSCAFG00000012661 I 0.672
RFX7 Canis familiaris ENSCAFG00000016029 I 0.685
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.685
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.671
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.672
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.685
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.672
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.672
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.685
rfx5 Danio rerio ENSDARG00000063258 I 0.676
rfx7 Danio rerio ENSDARG00000077237 I 0.685
RFX7 Danio rerio ENSDARG00000103691 I 0.685
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.685
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.672
RFX7 Equus caballus ENSECAG00000002379 I 0.680
RFX5 Equus caballus ENSECAG00000024774 I 0.672
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.670
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.673
RFX5 Echinops telfairi ENSETEG00000013503 I 0.672
RFX7 Echinops telfairi ENSETEG00000015037 I 0.670
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.675
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.685
RFX5 Felis catus ENSFCAG00000005568 I 0.672
RFX7 Felis catus ENSFCAG00000029408 I 0.688
RFX5 Homo sapiens ENSG00000143390 D 0.672
RFX7 Homo sapiens ENSG00000181827 D 0.685
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.686
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.685
RFX5 Gallus gallus ENSGALG00000000836 I 0.679
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.672
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.686
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.686
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.685
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.685
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.672
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.679
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.687
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.675
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.677
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.685
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.672
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.681
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.672
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.681
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.681
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.685
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.685
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.672
Rfx5 Mus musculus ENSMUSG00000005774 I 0.672
Rfx7 Mus musculus ENSMUSG00000037674 D 0.685
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.685
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.672
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.685
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.681
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.672
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.672
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.685
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.672
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.681
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.680
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.675
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.686
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.675
RFX7 Oryzias latipes ENSORLG00000005342 I 0.686
rfx7 Oryzias latipes ENSORLG00000008583 I 0.678
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.672
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.672
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.681
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.672
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.685
RFX7 Procavia capensis ENSPCAG00000004974 I 0.685
RFX5 Procavia capensis ENSPCAG00000011056 I 0.673
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.674
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.680
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.689
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.672
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.685
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.685
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.667
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.672
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.685
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.685
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.672
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.672
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.685
RFX5 Sorex araneus ENSSARG00000000750 I 0.672
RFX7 Sorex araneus ENSSARG00000010801 I 0.681
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.685
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.675
RFX5 Sus scrofa ENSSSCG00000006625 I 0.672
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.673
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.672
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.681
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.681
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.675
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.682
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.681
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.682
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.672
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.685
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.672
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.685
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.685
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.674
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.686
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.680
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.689
CG9727 Drosophila melanogaster FBgn0037445 I 0.787
GF16654 Drosophila ananassae FBgn0093675 I 0.786
GG10435 Drosophila erecta FBgn0102744 I 0.787
GH18082 Drosophila grimshawi FBgn0125550 I 0.785
GI24583 Drosophila mojavensis FBgn0147305 I 0.787
GL22063 Drosophila persimilis FBgn0159655 I 0.787
GM10553 Drosophila sechellia FBgn0165499 I 0.787
GD19544 Drosophila simulans FBgn0191039 I 0.787
GJ22650 Drosophila virilis FBgn0209754 I 0.787
GK13786 Drosophila willistoni FBgn0215794 I 0.787
GE24099 Drosophila yakuba FBgn0241238 I 0.787
GB49419 Apis mellifera GB49419 I 0.749
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.675
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.681
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.705
HMEL011744 Heliconius melpomene HMEL011744 I 0.736
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.705
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.706
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.749
ISCW001129 Ixodes scapularis ISCW001129 I 0.697
KGM_16732 Danaus plexippus KGM_16732 I 0.736
L798_03377 Zootermopsis nevadensis L798_03377 I 0.742
LCUP014592 Lucilia cuprina LCUP014592 I 0.766
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.730
LLOJ009233 Lutzomyia longipalpis LLOJ009233 N 0.681
LotgiG138119 Lottia gigantea LotgiG138119 I 0.689
MCINX003210 Melitaea cinxia MCINX003210 I 0.736
MDOA009335 Musca domestica MDOA009335 I 0.767
MESCA005939 Megaselia scalaris MESCA005939 N 0.686
MESCA006788 Megaselia scalaris MESCA006788 N 0.673
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.672
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.681
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.681
NV23037 Nasonia vitripennis NV23037 I 0.743
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.690
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.665
PHUM035280 Pediculus humanus PHUM035280 I 0.751
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.670
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.675
SINV24627 Solenopsis invicta SINV24627 I 0.749
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.696
Smp_040350 Schistosoma mansoni Smp_040350 I 0.703
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.692
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.694
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.696
T265_11740 Opisthorchis viverrini T265_11740 I 0.695
TC008959 Tribolium castaneum TC008959 I 0.738
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.707
TsM_000553100 Taenia solium TsM_000553100 I 0.705
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.705
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.685
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.673
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.666
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.677