UV8b_7132 (Ustilaginoidea virens)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 UV8b_7132 T318845_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.657 0.465
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.657 0.465
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.657 0.465
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.657 0.465
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.657 0.465
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KDB11989 RFX 187 257

Links

Other RFX family TFs
Other Ustilaginoidea virens TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29625.m000702 Ricinus communis 29625.m000702 I 0.000
29801.m003176 Ricinus communis 29801.m003176 I 0.000
30170.m013868 Ricinus communis 30170.m013868 I 0.000
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.000
ABF2 Arabidopsis thaliana AT1G45249 D 0.000
ABF1 Arabidopsis thaliana AT1G49720 D 0.000
ABF4 Arabidopsis thaliana AT3G19290 D 0.000
ABF3 Arabidopsis thaliana AT4G34000 D 0.000
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.000
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.000
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.000
Bo1g007700 Brassica oleracea Bo1g007700 I 0.000
Bo3g073080 Brassica oleracea Bo3g073080 I 0.000
Bo5g115300 Brassica oleracea Bo5g115300 I 0.000
Bo6g006970 Brassica oleracea Bo6g006970 I 0.000
Bo7g116570 Brassica oleracea Bo7g116570 I 0.000
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.000
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.000
Bra022409 Brassica rapa Bra022409 I 0.000
Bra037533 Brassica rapa Bra037533 I 0.000
Bra040260 Brassica rapa Bra040260 I 0.000
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.000
BRADI3G57960 Brachypodium distachyon BRADI3G57960 N 0.000
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.000
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.000
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.000
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.000
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.000
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.000
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.000
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.000
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.000
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.000
Ca_01548 Cicer arietinum Ca_01548 I 0.000
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.000
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.000
Cla016272 Citrullus lanatus Cla016272 I 0.000
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.000
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.000
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.000
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.000
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.000
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.000
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.000
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.000
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.000
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.000
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.000
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.000
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.000
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.000
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.000
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.000
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.000
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.000
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.000
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.000
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.000
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.000
GRMZM5G858197 Zea mays GRMZM5G858197 I 0.000
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.000
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.000
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.000
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.000
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.000
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.000
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.000
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.000
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.000
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.000
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.000
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.000
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.000
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.000
MDP0000248567 Malus domestica MDP0000248567 I 0.000
MDP0000296303 Malus domestica MDP0000296303 I 0.000
mgf002047m Mimulus guttatus mgf002047m I 0.000
mgf007524m Mimulus guttatus mgf007524m I 0.000
mgf014602m Mimulus guttatus mgf014602m I 0.000
mgf020824m Mimulus guttatus mgf020824m I 0.000
MLOC_20326 Hordeum vulgare MLOC_20326 N 0.000
MLOC_53580 Hordeum vulgare MLOC_53580 N 0.000
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.000
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.000
OB02G40680 Oryza brachyantha OB02G40680 I 0.000
OB08G24950 Oryza brachyantha OB08G24950 I 0.000
OB09G19140 Oryza brachyantha OB09G19140 I 0.000
OBART02G33770 Oryza barthii OBART02G33770 I 0.000
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.000
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.000
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.000
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.000
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.000
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.000
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.000
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.000
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.000
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.000
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.000
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.000
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.000
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.000
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.000
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.000
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.000
BZIP23 Oryza sativa OS02G0766700 I 0.000
BZIP46 Oryza sativa OS06G0211200 I 0.000
OS09G0456200 Oryza sativa OS09G0456200 I 0.000
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.000
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.000
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I 0.000
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.000
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.000
Pavir.J05659 Panicum virgatum Pavir.J05659 I 0.000
Pavir.J31353 Panicum virgatum Pavir.J31353 I 0.000
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.000
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.000
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.000
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.000
PK02169.1 Cannabis sativa PK02169.1 I 0.000
PK18009.1 Cannabis sativa PK18009.1 D 0.000
Pm021430 Prunus mume Pm021430 I 0.000
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.000
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.000
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.000
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.000
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.000
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.000
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.000
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.000
Sb03g040970 Sorghum bicolor Sb03g040970 I 0.000
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.000
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.000
Sb10g007090 Sorghum bicolor Sb10g007090 I 0.000
Si003247m.g Setaria italica Si003247m.g I 0.000
Si006889m.g Setaria italica Si006889m.g I 0.000
Si013904m.g Setaria italica Si013904m.g I 0.000
Si017618m.g Setaria italica Si017618m.g I 0.000
Si030114m.g Setaria italica Si030114m.g I 0.000
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.000
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.000
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.000
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.000
TCM_007074 Theobroma cacao TCM_007074 I 0.000
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.000
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.000
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.000
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.000
Traes_6AL_E8CD2C02B Triticum aestivum Traes_6AL_E8CD2C02B N 0.000
Traes_6DL_F7015CE89 Triticum aestivum Traes_6DL_F7015CE89 N 0.000
Traes_7DS_C6A3C10A6 Triticum aestivum Traes_7DS_C6A3C10A6 N 0.000
TRIUR3_23754 Triticum urartu TRIUR3_23754 N 0.000
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.000
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.000