Afo_R007667 (Aptenodytes forsteri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Afo_R007667 T318941_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.761 0.823
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.761 0.823
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.761 0.823
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.761 0.823
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.761 0.823
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.761 0.823
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.761 0.823
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.761 0.823
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.761 0.823
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.761 0.823
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.761 0.823
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.761 0.823
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.761 0.823
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.761 0.823
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.761 0.823
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.712 0.658
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.712 0.658
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.712 0.658
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.712 0.658
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R007667 RFX 41 119

Links

Other RFX family TFs
Other Aptenodytes forsteri TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_239429 Agaricus bisporus AGABI2DRAFT_239429 N 0.000
BBA_06721 Beauveria bassiana BBA_06721 I 0.000
BN946_scf184920.g52 Trametes cinnabarina BN946_scf184920.g52 I 0.000
BOTBODRAFT_93074 Botryobasidium botryosum BOTBODRAFT_93074 N 0.000
CC1G_08635 Coprinopsis cinerea CC1G_08635 N 0.000
CERSUDRAFT_109986 Ceriporiopsis subvermispora CERSUDRAFT_109986 N 0.000
CHGG_06554 Chaetomium globosum CHGG_06554 I 0.000
CTHT_0012120 Chaetomium thermophilum CTHT_0012120 I 0.000
CY34DRAFT_809202 Suillus luteus CY34DRAFT_809202 N 0.000
DACRYDRAFT_24120 Dacryopinax sp DACRYDRAFT_24120 I 0.000
DICSQDRAFT_66188 Dichomitus squalens DICSQDRAFT_66188 I 0.000
estExt_Genewise1Plus.C_sca_2_chr3_3_01039 Nectria haematococca estExt_Genewise1Plus.C_sca_2_chr3_3_01039 I 0.000
fgenesh1_pg.C_scaffold_14000237 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_14000237 N 0.000
FIBRA_01656 Fibroporia radiculosa FIBRA_01656 I 0.000
FOMPIDRAFT_1017957 Fomitopsis pinicola FOMPIDRAFT_1017957 N 0.000
GALMADRAFT_217801 Galerina marginata GALMADRAFT_217801 N 0.000
GLOTRDRAFT_69493 Gloeophyllum trabeum GLOTRDRAFT_69493 I 0.000
GSTUM_00002563001 Tuber melanosporum GSTUM_00002563001 I 0.000
gw1.1.2337.1 Heterobasidion annosum gw1.1.2337.1 N 0.000
HETIRDRAFT_443323 Heterobasidion irregulare HETIRDRAFT_443323 N 0.000
HYDPIDRAFT_161884 Hydnomerulius pinastri HYDPIDRAFT_161884 N 0.000
JAAARDRAFT_60403 Jaapia argillacea JAAARDRAFT_60403 N 0.000
K443DRAFT_677716 Laccaria amethystina K443DRAFT_677716 N 0.000
M378DRAFT_66555 Amanita muscaria M378DRAFT_66555 N 0.000
M404DRAFT_43642 Pisolithus tinctorius M404DRAFT_43642 N 0.000
M407DRAFT_78353 Tulasnella calospora M407DRAFT_78353 N 0.000
M408DRAFT_34303 Serendipita vermifera M408DRAFT_34303 N 0.000
M413DRAFT_232462 Hebeloma cylindrosporum M413DRAFT_232462 N 0.000
M422DRAFT_84080 Sphaerobolus stellatus M422DRAFT_84080 N 0.000
MAC_00870 Metarhizium acridum MAC_00870 I 0.000
MAJ_03937 Metarhizium majus MAJ_03937 I 0.000
MAM_03270 Metarhizium album MAM_03270 I 0.000
MANI_016891 Metarhizium anisopliae MANI_016891 I 0.000
MBR_08061 Metarhizium brunneum MBR_08061 I 0.000
MGU_03543 Metarhizium guizhouense MGU_03543 I 0.000
Moror_376 Moniliophthora roreri Moror_376 I 0.000
MPER_01714 Moniliophthora perniciosa MPER_01714 I 0.000
MYCTH_2298160 Myceliophthora thermophila MYCTH_2298160 I 0.000
NechaG67451 Fusarium solani NechaG67451 I 0.000
PAXRUDRAFT_30646 Paxillus rubicundulus PAXRUDRAFT_30646 N 0.000
PHACADRAFT_246479 Phanerochaete carnosa PHACADRAFT_246479 N 0.000
PHLGIDRAFT_129508 Phlebiopsis gigantea PHLGIDRAFT_129508 N 0.000
PIIN_04121 Piriformospora indica PIIN_04121 N 0.000
PILCRDRAFT_818339 Piloderma croceum PILCRDRAFT_818339 N 0.000
PISMIDRAFT_69441 Pisolithus microcarpus PISMIDRAFT_69441 N 0.000
PISMIDRAFT_70573 Pisolithus microcarpus PISMIDRAFT_70573 N 0.000
PLEOSDRAFT_1111247 Pleurotus ostreatus PLEOSDRAFT_1111247 N 0.000
POSPLDRAFT_93814 Postia placenta POSPLDRAFT_93814 I 0.000
S40285_07743 Stachybotrys chlorohalonata S40285_07743 I 0.000
S40288_03446 Stachybotrys chartarum S40288_03446 I 0.000
SCHCODRAFT_79748 Schizophyllum commune SCHCODRAFT_79748 N 0.000
SCLCIDRAFT_18203 Scleroderma citrinum SCLCIDRAFT_18203 N 0.000
SERLA73DRAFT_78019 Serpula lacrymans SERLA73DRAFT_78019 N 0.000
TRIATDRAFT_300980 Trichoderma atroviride TRIATDRAFT_300980 I 0.000
TRIREDRAFT_74576 Trichoderma reesei TRIREDRAFT_74576 I 0.000
TRIVIDRAFT_150786 Trichoderma virens TRIVIDRAFT_150786 I 0.000
V565_015180 Rhizoctonia solani V565_015180 N 0.000
X797_006365 Metarhizium robertsii X797_006365 I 0.000