HDID_0000095701 (Hymenolepis diminuta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 HDID_0000095701 T319199_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.711 0.570
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.711 0.570
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.711 0.570
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.711 0.570
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.697 0.519
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.697 0.519
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.697 0.519
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.697 0.519
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.697 0.519
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.697 0.519
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.697 0.519
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.697 0.519
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.697 0.519
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.697 0.519
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.697 0.519
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.697 0.519
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.697 0.519
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.697 0.519
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.697 0.519
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HDID_0000095701-mRNA-1 RFX 95 173

Links

Other RFX family TFs
Other Hymenolepis diminuta TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL017280 Aedes aegypti AAEL017280 N 0.000
AALB003072 Anopheles albimanus AALB003072 N 0.000
AARA000452 Anopheles arabiensis AARA000452 N 0.000
AATE006796 Anopheles atroparvus AATE006796 N 0.000
ACEP26642 Atta cephalotes ACEP26642 N 0.000
ACHR005336 Anopheles christyi ACHR005336 N 0.000
ACUA025715 Anopheles culicifacies ACUA025715 N 0.000
ACYPI006497 Acyrthosiphon pisum ACYPI006497 N 0.000
ADAC008556 Anopheles darlingi ADAC008556 N 0.000
ADIR002498 Anopheles dirus ADIR002498 N 0.000
AEPI003661 Anopheles epiroticus AEPI003661 N 0.000
AFAF010393 Anopheles farauti AFAF010393 N 0.000
AFUN009891 Anopheles funestus AFUN009891 N 0.000
AGAP001786 Anopheles gambiae AGAP001786 N 0.000
AMAM004700 Anopheles maculatus AMAM004700 N 0.000
AMEC021754 Anopheles melas AMEC021754 N 0.000
AMEM013442 Anopheles merus AMEM013442 N 0.000
AMIN000696 Anopheles minimus AMIN000696 N 0.000
AQUA004105 Anopheles quadriannulatus AQUA004105 N 0.000
ASTEI11512 Anopheles stephensi ASTEI11512 N 0.000
BGIBMGA010273 Bombyx mori BGIBMGA010273 N 0.000
Cflo_01219--XP_395512.3_APIME Camponotus floridanus Cflo_01219--XP_395512.3_APIME N 0.000
CLEC012210 Cimex lectularius CLEC012210 N 0.000
CMM307C Cyanidioschyzon merolae CMM307C I 0.000
CPIJ010152 Culex quinquefasciatus CPIJ010152 N 0.000
CpipJ_CPIJ010152 Culex pipiens CpipJ_CPIJ010152 N 0.000
csin104729 Clonorchis sinensis csin104729 N 0.000
D915_06741 Fasciola hepatica D915_06741 N 0.000
DAPPUDRAFT_327651 Daphnia pulex DAPPUDRAFT_327651 N 0.000
DME_0001005001 Dracunculus medinensis DME_0001005001 N 0.000
ECANG7_06547 Echinococcus canadensis ECANG7_06547 I 0.000
EmuJ_001157200 Echinococcus multilocularis EmuJ_001157200 I 0.000
osa Drosophila yakuba FBgn0041640 N 0.000
GF23141 Drosophila ananassae FBgn0100135 N 0.000
GG16758 Drosophila erecta FBgn0108988 N 0.000
GH15872 Drosophila grimshawi FBgn0123343 N 0.000
GI23637 Drosophila mojavensis FBgn0146363 N 0.000
GM15347 Drosophila sechellia FBgn0170267 N 0.000
GJ24712 Drosophila virilis FBgn0211788 N 0.000
GK22507 Drosophila willistoni FBgn0224484 N 0.000
GA26236 Drosophila pseudoobscura FBgn0247610 N 0.000
osa Drosophila melanogaster FBgn0261885 N 0.000
GB44899 Apis mellifera GB44899 N 0.000
HDID_0000342501 Hymenolepis diminuta HDID_0000342501 I 0.000
HHAL005964-PA Halyomorpha halys HHAL005964-PA N 0.000
HmN_000451100 Hymenolepis microstoma HmN_000451100 I 0.000
HNAJ_0000082601 Hymenolepis nana HNAJ_0000082601 I 0.000
Hsal_01939--XP_395512.3_APIME Harpegnathos saltator Hsal_01939--XP_395512.3_APIME N 0.000
ISCW014189 Ixodes scapularis ISCW014189 I 0.000
KGM_12579 Danaus plexippus KGM_12579 N 0.000
LCUP015823 Lucilia cuprina LCUP015823 N 0.000
LDEC011073 Leptinotarsa decemlineata LDEC011073 I 0.000
LLOJ000864 Lutzomyia longipalpis LLOJ000864 N 0.000
MCOS_0000539101 Mesocestoides corti MCOS_0000539101 I 0.000
MDOA004559 Musca domestica MDOA004559 N 0.000
PHUM080380 Pediculus humanus PHUM080380 N 0.000
PPAI002183 Phlebotomus papatasi PPAI002183 N 0.000
PXEA_0000852601 Protopolystoma xenopodis PXEA_0000852601 N 0.000
RPRC005301 Rhodnius prolixus RPRC005301 N 0.000
SCUD_0001703701 Schistosoma curassoni SCUD_0001703701 N 0.000
SINV22763 Solenopsis invicta SINV22763 N 0.000
Sjc_0060650 Schistosoma japonicum Sjc_0060650 N 0.000
SMAR003184 Strigamia maritima SMAR003184 I 0.000
SMAR006121 Strigamia maritima SMAR006121 I 0.000
Smp_156170 Schistosoma mansoni Smp_156170 N 0.000
SMTD_0000055001 Schistosoma mattheei SMTD_0000055001 N 0.000
SMU15017366 Schmidtea mediterranea SMU15017366 N 0.000
SMU15033702 Schmidtea mediterranea SMU15033702 N 0.000
SSLN_0000405401 Schistocephalus solidus SSLN_0000405401 I 0.000
T265_07301 Opisthorchis viverrini T265_07301 N 0.000
TC013586 Tribolium castaneum TC013586 N 0.000
tetur02g14160 Tetranychus urticae tetur02g14160 N 0.000
tetur02g14180 Tetranychus urticae tetur02g14180 N 0.000
TsM_000529300 Taenia solium TsM_000529300 I 0.000
TTAC_0000915101 Hydatigera taeniaeformis TTAC_0000915101 I 0.000
YQE_09239 Dendroctonus ponderosae YQE_09239 N 0.000