Runx1 (Mus musculus)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSMUSG00000022952 T319428_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00		 Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2		 (Direct) (Direct)
Runx1
M09372_2.00		 Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A		 (Direct) (Direct)
Runx1
M09633_2.00		 Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		1.000 1.000
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		1.000 1.000
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		1.000 1.000
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		1.000 1.000
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		1.000 1.000
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		1.000 1.000
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		1.000 1.000
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		1.000 1.000
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		1.000 1.000
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.931 0.931
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.931 0.931
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.931 0.931
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.931 0.931
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.931 0.931
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.931 0.931
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.931 0.931
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.931 0.931
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.931 0.931
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.931 0.931
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.931 0.931
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.931 0.931
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.923 0.923
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.923 0.923
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.923 0.923
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.923 0.923
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.923 0.923
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.923 0.923
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.923 0.923
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.923 0.923
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.923 0.923
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.923 0.923
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.923 0.923
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.923 0.923
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.710 0.710
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000023673 Runt 65 194
ENSMUSP00000109589 Runt 51 180
ENSMUSP00000131079 Runt 51 180
ENSMUSP00000139819 Runt 1 62

Links

Other Runt family TFs
Other Mus musculus TFs

409 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003968 Aedes aegypti AAEL003968 N
AALB008486 Anopheles albimanus AALB008486 N
AARA009005 Anopheles arabiensis AARA009005 N
AATE001469 Anopheles atroparvus AATE001469 N
ACHR004577 Anopheles christyi ACHR004577 N
ACOM027442 Anopheles coluzzii ACOM027442 N
ACYPI001312 Acyrthosiphon pisum ACYPI001312 N
ACYPI004047 Acyrthosiphon pisum ACYPI004047 N
ADAC000396 Anopheles darlingi ADAC000396 N
ADIR009502 Anopheles dirus ADIR009502 N
AEPI007981 Anopheles epiroticus AEPI007981 N
AFAF015825 Anopheles farauti AFAF015825 N
AGAP010700 Anopheles gambiae AGAP010700 N
AMAM002480 Anopheles maculatus AMAM002480 N
AMEC018533 Anopheles melas AMEC018533 N
AMEM011057 Anopheles merus AMEM011057 N
AMIN008662 Anopheles minimus AMIN008662 N
Aqu1.227716 Amphimedon queenslandica Aqu1.227716 N
AQUA002391 Anopheles quadriannulatus AQUA002391 N
BGIBMGA000930 Bombyx mori BGIBMGA000930 N
Brh_R002088 Buceros rhinoceros Brh_R002088 N
Cflo_07758--XP_396195.2_APIME Camponotus floridanus Cflo_07758--XP_396195.2_APIME N
CLEC009664 Cimex lectularius CLEC009664 N
Cmyd_10005769 Chelonia mydas Cmyd_10005769 N
CPIJ011038 Culex quinquefasciatus CPIJ011038 N
CpipJ_CPIJ011038 Culex pipiens CpipJ_CPIJ011038 N
ENSAMXG00000005709 Astyanax mexicanus ENSAMXG00000005709 N
ENSEEUG00000014927 Erinaceus europaeus ENSEEUG00000014927 N
ENSGGOG00000012841 Gorilla gorilla ENSGGOG00000012841 N
SMARCA1 Pteropus vampyrus ENSPVAG00000003805 N
ENSTGUG00000015201 Taeniopygia guttata ENSTGUG00000015201 N
ENSTSYG00000004240 Tarsius syrichta ENSTSYG00000004240 N
ENSVPAG00000010492 Vicugna pacos ENSVPAG00000010492 N
GB49325 Apis mellifera GB49325 N
HHAL007873-PA Halyomorpha halys HHAL007873-PA N
HHAL009893-PA Halyomorpha halys HHAL009893-PA N
Hsal_10566--XP_396195.2_APIME Harpegnathos saltator Hsal_10566--XP_396195.2_APIME N
KGM_18078 Danaus plexippus KGM_18078 N
L798_15354 Zootermopsis nevadensis L798_15354 N
LLOJ000827 Lutzomyia longipalpis LLOJ000827 N
MCINX005268 Melitaea cinxia MCINX005268 N
NEMVEDRAFT_v1g226879 Nematostella vectensis NEMVEDRAFT_v1g226879 N
NV15374 Nasonia vitripennis NV15374 N
PPA02259 Pristionchus pacificus PPA02259 N
PPAI003395 Phlebotomus papatasi PPAI003395 N
RPRC004446 Rhodnius prolixus RPRC004446 N
SINV15598 Solenopsis invicta SINV15598 N
SMAR014171 Strigamia maritima SMAR014171 N
XP_002163131.1 Hydra magnipapillata XP_002163131.1 N