SMAR009403 (Strigamia maritima)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 SMAR009403 T319623_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.793 0.793
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.793 0.793
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.793 0.793
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.793 0.793
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.793 0.793
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.793 0.793
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.793 0.793
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.793 0.793
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.793 0.793
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.793 0.793
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.793 0.793
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.793 0.793
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.793 0.793
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.793 0.793
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.793 0.793
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.793 0.793
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.783 0.783
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.783 0.783
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.783 0.783
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.783 0.783
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.783 0.783
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.783 0.783
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.783 0.783
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.783 0.783
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.783 0.783
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.783 0.783
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.783 0.783
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.783 0.783
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.783 0.783
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.783 0.783
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.783 0.783
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.783 0.783
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.783 0.783
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.783 0.783
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.783 0.783
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.783 0.783
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.783 0.783
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.783 0.783
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.783 0.783
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.783 0.783
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMAR009403-PA Runt 30 121

Links

Other Runt family TFs
Other Strigamia maritima TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA034827 Oryza indica BGIOSGA034827 N
BGIOSGA037021 Oryza indica BGIOSGA037021 N
BRADI4G42120 Brachypodium distachyon BRADI4G42120 N
Cla017983 Citrullus lanatus Cla017983 I
Cucsa.240980 Cucumis sativus Cucsa.240980 I
F775_01937 Aegilops tauschii F775_01937 N
GSMUA_Achr5G17460_001 Musa acuminata GSMUA_Achr5G17460_001 N
GSMUA_Achr9G02570_001 Musa acuminata GSMUA_Achr9G02570_001 N
LPERR11G02970 Leersia perrieri LPERR11G02970 N
LPERR12G03230 Leersia perrieri LPERR12G03230 N
Lus10035597.g Linum usitatissimum Lus10035597.g I
MLOC_15316 Hordeum vulgare MLOC_15316 N
MLOC_22590 Hordeum vulgare MLOC_22590 N
MTR_7g104190 Medicago truncatula MTR_7g104190 I
OB11G12850 Oryza brachyantha OB11G12850 N
OB12G13360 Oryza brachyantha OB12G13360 N
OBART11G03540 Oryza barthii OBART11G03540 N
OBART12G03450 Oryza barthii OBART12G03450 N
OGLUM11G03180 Oryza glumaepatula OGLUM11G03180 N
OGLUM12G04120 Oryza glumaepatula OGLUM12G04120 N
OLONG_000717 Oryza longistaminata OLONG_000717 N
OLONG_019285 Oryza longistaminata OLONG_019285 N
ONIVA12G03070 Oryza nivara ONIVA12G03070 N
OPUNC12G03250 Oryza punctata OPUNC12G03250 N
ORUFI12G03900 Oryza rufipogon ORUFI12G03900 N
OS11G0154900 Oryza sativa OS11G0154900 N
Pavir.Ca00162 Panicum virgatum Pavir.Ca00162 N
Pavir.Cb02058 Panicum virgatum Pavir.Cb02058 N
Pavir.Hb01810 Panicum virgatum Pavir.Hb01810 N
Pavir.J28001 Panicum virgatum Pavir.J28001 N
PRUPE_ppa003901mg Prunus persica PRUPE_ppa003901mg I
Sb05g003420 Sorghum bicolor Sb05g003420 N
Sb08g003500 Sorghum bicolor Sb08g003500 N
Si012481m.g Setaria italica Si012481m.g N
Si026452m.g Setaria italica Si026452m.g N
Solyc09g009760.1 Solanum lycopersicum Solyc09g009760.1 I
Traes_4AL_792F1D482 Triticum aestivum Traes_4AL_792F1D482 N
Traes_4BS_8439AC445 Triticum aestivum Traes_4BS_8439AC445 N
Traes_4DS_FAFED0328 Triticum aestivum Traes_4DS_FAFED0328 N
Traes_5AL_09C375647 Triticum aestivum Traes_5AL_09C375647 N
Traes_5BL_6C613A3D9 Triticum aestivum Traes_5BL_6C613A3D9 N
Traes_5DL_A528A05A3 Triticum aestivum Traes_5DL_A528A05A3 N
TRIUR3_33961 Triticum urartu TRIUR3_33961 N