XP_002939386 (Xenopus tropicalis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 XP_002939386 T319710_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.992 0.992
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.992 0.992
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.992 0.992
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.992 0.992
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.992 0.992
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.992 0.992
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.992 0.992
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.992 0.992
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.992 0.992
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.992 0.992
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.992 0.992
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.992 0.992
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.923 0.923
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.923 0.923
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.923 0.923
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.923 0.923
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.923 0.923
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.923 0.923
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.923 0.923
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.923 0.923
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.923 0.923
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.923 0.923
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.923 0.923
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.923 0.923
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.915 0.915
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.915 0.915
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.915 0.915
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.915 0.915
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.915 0.915
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.915 0.915
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.915 0.915
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.915 0.915
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.915 0.915
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.915 0.915
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.915 0.915
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.915 0.915
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939386 Runt 65 194

Links

Other Runt family TFs
Other Xenopus tropicalis TFs

372 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL006160 Aedes aegypti AAEL006160 I 0.777
AAEL007036 Aedes aegypti AAEL007036 I 0.705
AALB007753 Anopheles albimanus AALB007753 I 0.777
AARA011332 Anopheles arabiensis AARA011332 I 0.753
AATE002063 Anopheles atroparvus AATE002063 I 0.777
ACEP16391 Atta cephalotes ACEP16391 I
ACEP16409 Atta cephalotes ACEP16409 I 0.737
ACHR007816 Anopheles christyi ACHR007816 I 0.755
ACUA002933 Anopheles culicifacies ACUA002933 I 0.733
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.738
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.754
ADIR001029 Anopheles dirus ADIR001029 I 0.727
AEPI011470 Anopheles epiroticus AEPI011470 I 0.783
AFAF002111 Anopheles farauti AFAF002111 I 0.745
AFUN010424 Anopheles funestus AFUN010424 I 0.737
AMEC011614 Anopheles melas AMEC011614 I 0.731
AMEM009849 Anopheles merus AMEM009849 N
AMIN005760 Anopheles minimus AMIN005760 I 0.718
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.768
ASIS002518 Anopheles sinensis ASIS002518 I 0.777
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.777
BGIBMGA008970 Bombyx mori BGIBMGA008970 I 0.723
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.785
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.777
CLEC011123 Cimex lectularius CLEC011123 I
CLEC011127 Cimex lectularius CLEC011127 I
Cmyd_10021516 Chelonia mydas Cmyd_10021516 I 0.992
CPIJ006369 Culex quinquefasciatus CPIJ006369 I 0.737
CPIJ006372 Culex quinquefasciatus CPIJ006372 I 0.722
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.779
CpipJ_CPIJ006369 Culex pipiens CpipJ_CPIJ006369 I 0.737
CpipJ_CPIJ006372 Culex pipiens CpipJ_CPIJ006372 I 0.722
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.779
ENSAMEG00000005325 Ailuropoda melanoleuca ENSAMEG00000005325 I 0.992
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.923
RUNX1 Bos taurus ENSBTAG00000004742 I 0.985
RUNX1 Canis familiaris ENSCAFG00000009596 I 0.992
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 1.000
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 0.985
ENSCSAG00000008703 Chlorocebus sabaeus ENSCSAG00000008703 I 0.992
runx3 Danio rerio ENSDARG00000052826 I 0.923
runx1 Danio rerio ENSDARG00000087646 I 0.968
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.985
Runx1 Dipodomys ordii ENSDORG00000004347 I 0.992
RUNX1 Equus caballus ENSECAG00000003462 I 0.985
ENSFALG00000000025 Ficedula albicollis ENSFALG00000000025 I 0.992
RUNX1 Homo sapiens ENSG00000159216 D 0.992
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.923
RUNX1 Gallus gallus ENSGALG00000016022 I 0.992
RUNX1 Gorilla gorilla ENSGGOG00000012862 I 0.992
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.885
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.954
RUNX1 Loxodonta africana ENSLAFG00000004290 I 0.992
RUNX1 Microcebus murinus ENSMICG00000011998 I 0.992
RUNX1 Macaca mulatta ENSMMUG00000001649 I 1.000
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.985
Runx1 Mus musculus ENSMUSG00000022952 D 0.992
ENSNLEG00000004310 Nomascus leucogenys ENSNLEG00000004310 I 0.992
RUNX1 Oryctolagus cuniculus ENSOCUG00000013731 I 0.992
RUNX1 Otolemur garnettii ENSOGAG00000033362 I 0.992
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.923
runx3 Oryzias latipes ENSORLG00000017515 I 0.923
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.969
ENSP00000409227-D1 Bos grunniens ENSP00000409227-D1 I 0.985
ENSPANG00000007357 Papio anubis ENSPANG00000007357 I 0.992
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.923
ENSPPYG00000011394 Pongo abelii ENSPPYG00000011394 I 0.992
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 0.992
RUNX1 Pan troglodytes ENSPTRG00000013883 I 0.992
Runx1 Rattus norvegicus ENSRNOG00000001704 I 0.992
ENSSSCG00000012051 Sus scrofa ENSSSCG00000012051 I 0.992
ENSSSCG00000025261 Sus scrofa ENSSSCG00000025261 I 0.867
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.931
runx3 Takifugu rubripes ENSTRUG00000001517 I 0.931
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.969
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.969
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.923
lz Drosophila melanogaster FBgn0002576 D 0.731
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.715
GF15967 Drosophila ananassae FBgn0092990 I 0.715
GG18309 Drosophila erecta FBgn0110525 I 0.731
GG19691 Drosophila erecta FBgn0111893 I 0.715
GH17737 Drosophila grimshawi FBgn0125207 I 0.715
GI15484 Drosophila mojavensis FBgn0138233 I 0.701
GL15800 Drosophila persimilis FBgn0153404 I 0.715
GL16499 Drosophila persimilis FBgn0154103 I 0.738
GM22478 Drosophila sechellia FBgn0177348 I 0.731
GM23044 Drosophila sechellia FBgn0177912 I 0.715
GD17495 Drosophila simulans FBgn0189047 I 0.715
GJ19245 Drosophila virilis FBgn0206390 I 0.715
GK19810 Drosophila willistoni FBgn0221808 I 0.715
GE17788 Drosophila yakuba FBgn0235232 I 0.731
GE17890 Drosophila yakuba FBgn0235328 I 0.715
GA22609 Drosophila pseudoobscura FBgn0244012 I 0.738
RunxB Drosophila melanogaster FBgn0259162 I 0.715
GB52761 Apis mellifera GB52761 I 0.769
Gfo_R015914 Geospiza fortis Gfo_R015914 I 0.957
HMEL009843 Heliconius melpomene HMEL009843 I 0.768
HMEL014738 Heliconius melpomene HMEL014738 I
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.738
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.785
Hsal_12322--XP_394014.2_APIME Harpegnathos saltator Hsal_12322--XP_394014.2_APIME I 0.769
KGM_02818 Danaus plexippus KGM_02818 I 0.735
LCUP002652 Lucilia cuprina LCUP002652 I 0.723
LCUP002657 Lucilia cuprina LCUP002657 I 0.729
LDEC006650 Leptinotarsa decemlineata LDEC006650 I 0.720
LDEC020505 Leptinotarsa decemlineata LDEC020505 I 0.710
LLOJ002049 Lutzomyia longipalpis LLOJ002049 I 0.737
MCINX000302 Melitaea cinxia MCINX000302 I 0.754
MDOA013149 Musca domestica MDOA013149 I 0.708
MESCA007079 Megaselia scalaris MESCA007079 I 0.800
NV10998 Nasonia vitripennis NV10998 I 0.738
NV11000 Nasonia vitripennis NV11000 I 0.762
Ocbimv22002042m.g Octopus bimaculoides Ocbimv22002042m.g I
Ogr17914 Ophisaurus gracilis Ogr17914 I 0.992
PHUM333300 Pediculus humanus PHUM333300 I 0.769
PHUM333340 Pediculus humanus PHUM333340 I 0.731
PPAI010985 Phlebotomus papatasi PPAI010985 I
Pvit_04762 Pogona vitticeps Pvit_04762 I 0.992
RPRC000026 Rhodnius prolixus RPRC000026 I 0.745
RPRC005391 Rhodnius prolixus RPRC005391 I 0.769
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.831
SINV13317 Solenopsis invicta SINV13317 I 0.785
SINV13345 Solenopsis invicta SINV13345 I 0.750
SINV13363 Solenopsis invicta SINV13363 I 0.769
SMAR009403 Strigamia maritima SMAR009403 I 0.804
TC006536 Tribolium castaneum TC006536 I 0.754
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.746
runx1.L Xenopus laevis XB-GENE-864949 I 0.985
XP_002939387 Xenopus tropicalis XP_002939387 I 1.000
YQE_12216 Dendroctonus ponderosae YQE_12216 I
YQE_12218 Dendroctonus ponderosae YQE_12218 I 0.769