Bra008153 (Brassica rapa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bra008153 T319949_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.816 0.816
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008153.1-P RWP-RK 119 167

Links

Other RWP-RK family TFs
Other Brassica rapa TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29598.m000468 Ricinus communis 29598.m000468 I
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I
BZIP63 Arabidopsis thaliana AT5G28770 D
BGIOSGA006734 Oryza indica BGIOSGA006734 I
BGIOSGA007649 Oryza indica BGIOSGA007649 I
BGIOSGA037742 Oryza indica BGIOSGA037742 I
Bo2g151850 Brassica oleracea Bo2g151850 I
Bo7g093030 Brassica oleracea Bo7g093030 I
Bostr.25517s0001 Boechera stricta Bostr.25517s0001 I
Bra010010 Brassica rapa Bra010010 I
Bra020620 Brassica rapa Bra020620 I
BRADI4G02570 Brachypodium distachyon BRADI4G02570 N
Cagra.5456s0001 Capsella grandiflora Cagra.5456s0001 I
Carubv10001450m.g Capsella rubella Carubv10001450m.g I
cassava18571.valid.m1 Manihot esculenta cassava18571.valid.m1 I
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I
Ca_01234 Cicer arietinum Ca_01234 I
Ca_03753 Cicer arietinum Ca_03753 I
chr5.LjT29J15.10.nc Lotus japonicus chr5.LjT29J15.10.nc I
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I
Cla011478 Citrullus lanatus Cla011478 I
Cla015037 Citrullus lanatus Cla015037 I
Cla020112 Citrullus lanatus Cla020112 I
CPRF2_PETCR Petroselinum crispum CPRF2_PETCR D
Cucsa.133290 Cucumis sativus Cucsa.133290 I
Cucsa.289120 Cucumis sativus Cucsa.289120 I
Cucsa.388800 Cucumis sativus Cucsa.388800 I
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I
estExt_Genewise1.C_2060077 Physcomitrella patens estExt_Genewise1.C_2060077 D
Eucgr.H04338 Eucalyptus grandis Eucgr.H04338 I
BZO2H3 Arabidopsis lyrata fgenesh2_kg.6__2797__AT5G28770.2 I
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I
GLYMA03G40730 Glycine max GLYMA03G40730 I
GLYMA10G30410 Glycine max GLYMA10G30410 I
GLYMA19G43420 Glycine max GLYMA19G43420 I
GLYMA20G36750 Glycine max GLYMA20G36750 I
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I
GRMZM2G098904 Zea mays GRMZM2G098904 I
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I
gw1.220.22.1 Physcomitrella patens gw1.220.22.1 I
LPERR02G04950 Leersia perrieri LPERR02G04950 I
LPERR12G15130 Leersia perrieri LPERR12G15130 I
Lus10006590.g Linum usitatissimum Lus10006590.g I
Lus10015913.g Linum usitatissimum Lus10015913.g I
MDP0000270365 Malus domestica MDP0000270365 I
mgf009803m Mimulus guttatus mgf009803m I
mgf012838m Mimulus guttatus mgf012838m I
MTR_1g080920 Medicago truncatula MTR_1g080920 I
MTR_7g115120 Medicago truncatula MTR_7g115120 I
OB02G14920 Oryza brachyantha OB02G14920 I
OB02G19520 Oryza brachyantha OB02G19520 I
OB12G24740 Oryza brachyantha OB12G24740 I
OBART02G05680 Oryza barthii OBART02G05680 I
OBART02G11580 Oryza barthii OBART02G11580 I
OBART12G18120 Oryza barthii OBART12G18120 I
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I
OGLUM12G19660 Oryza glumaepatula OGLUM12G19660 I
OLONG_006713 Oryza longistaminata OLONG_006713 N
OMERI02G06470 Oryza meridionalis OMERI02G06470 I
OMERI02G12230 Oryza meridionalis OMERI02G12230 I
ONIVA02G06040 Oryza nivara ONIVA02G06040 I
ONIVA02G12920 Oryza nivara ONIVA02G12920 I
ONIVA12G16860 Oryza nivara ONIVA12G16860 I
OPUNC02G10230 Oryza punctata OPUNC02G10230 I
OPUNC12G16360 Oryza punctata OPUNC12G16360 I
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I
ORUFI12G20050 Oryza rufipogon ORUFI12G20050 I
OS02G0175100 Oryza sativa OS02G0175100 I
OS02G0266800 Oryza sativa OS02G0266800 D
OS12G0601800 Oryza sativa OS12G0601800 I
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I
Pavir.Ca02738 Panicum virgatum Pavir.Ca02738 I
Pavir.Cb00258 Panicum virgatum Pavir.Cb00258 I
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I
PK05128.1 Cannabis sativa PK05128.1 D
Pm003522 Prunus mume Pm003522 I
POPTR_0005s05470 Populus trichocarpa POPTR_0005s05470 I
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I
PRUPE_ppa005585mg Prunus persica PRUPE_ppa005585mg I
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I
Sb04g005020 Sorghum bicolor Sb04g005020 I
Sb08g020600 Sorghum bicolor Sb08g020600 I
SELMODRAFT_270282 Selaginella moellendorffii SELMODRAFT_270282 I
SELMODRAFT_439017 Selaginella moellendorffii SELMODRAFT_439017 I
Si017778m.g Setaria italica Si017778m.g I
Si022331m.g Setaria italica Si022331m.g I
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I
TCM_026349 Theobroma cacao TCM_026349 I
Thhalv10004611m.g Eutrema salsugineum Thhalv10004611m.g I
ATBZIP9 Vitis vinifera VIT_04s0008g02750 I
BZO2H3 Vitis vinifera VIT_14s0030g02200 I