Bra012122 (Brassica rapa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bra012122 T319954_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.714 0.714
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012122.1-P RWP-RK 152 200

Links

Other RWP-RK family TFs
Other Brassica rapa TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004659 Ricinus communis 30076.m004659 I
BZIP53 Arabidopsis thaliana AT3G62420 D
BGIOSGA019116 Oryza indica BGIOSGA019116 N
BGIOSGA019118 Oryza indica BGIOSGA019118 I
Bo6g079450 Brassica oleracea Bo6g079450 I
Bo8g097830 Brassica oleracea Bo8g097830 I
Bra003500 Brassica rapa Bra003500 I
Bra007679 Brassica rapa Bra007679 I
BRADI2G38380 Brachypodium distachyon BRADI2G38380 N
Cagra.0483s0006 Capsella grandiflora Cagra.0483s0006 I
Carubv10018852m.g Capsella rubella Carubv10018852m.g I
cassava23775.valid.m1 Manihot esculenta cassava23775.valid.m1 I
cassava36049.valid.m1 Manihot esculenta cassava36049.valid.m1 I
Ca_01004 Cicer arietinum Ca_01004 I
Ca_03512 Cicer arietinum Ca_03512 I
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I
ATBZIP53 Arabidopsis lyrata fgenesh2_kg.5__2740__AT3G62420.1 I
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I
GLYMA03G37790 Glycine max GLYMA03G37790 I
GLYMA19G40390 Glycine max GLYMA19G40390 I
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I
Lus10010005.g Linum usitatissimum Lus10010005.g I
Lus10025024.g Linum usitatissimum Lus10025024.g I
MDP0000437680 Malus domestica MDP0000437680 I
mgf018581m Mimulus guttatus mgf018581m I
MLOC_52125 Hordeum vulgare MLOC_52125 N
OB05G12090 Oryza brachyantha OB05G12090 N
OBART05G02070 Oryza barthii OBART05G02070 N
OGLUM05G02130 Oryza glumaepatula OGLUM05G02130 N
OMERI05G02170 Oryza meridionalis OMERI05G02170 N
ONIVA05G02010 Oryza nivara ONIVA05G02010 I
OPUNC05G01750 Oryza punctata OPUNC05G01750 N
ORGLA05G0020300 Oryza glaberrima ORGLA05G0020300 N
ORUFI05G02170 Oryza rufipogon ORUFI05G02170 N
OS05G0129300 Oryza sativa OS05G0129300 N
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N
PK03779.1 Cannabis sativa PK03779.1 I
PK07533.1 Cannabis sativa PK07533.1 I
POPTR_0002s19720 Populus trichocarpa POPTR_0002s19720 I
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I
POPTR_0014s11590 Populus trichocarpa POPTR_0014s11590 I
SapurV1A.0158s0220 Salix purpurea SapurV1A.0158s0220 I
SapurV1A.3521s0020 Salix purpurea SapurV1A.3521s0020 I
Si023562m.g Setaria italica Si023562m.g N
TCM_004807 Theobroma cacao TCM_004807 I
Thhalv10006418m.g Eutrema salsugineum Thhalv10006418m.g I
Traes_1AS_94B6230FB1 Triticum aestivum Traes_1AS_94B6230FB1 N
Traes_1BS_A44C97E0F Triticum aestivum Traes_1BS_A44C97E0F N
Traes_1DS_62FDD3493 Triticum aestivum Traes_1DS_62FDD3493 N