Carubv10021541m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10021541m.g T321098_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.918 0.918
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.918 0.918
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021541m RWP-RK 134 182

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004659 Ricinus communis 30076.m004659 I
30131.m007078 Ricinus communis 30131.m007078 I
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I
BZIP53 Arabidopsis thaliana AT3G62420 D
Bo6g079450 Brassica oleracea Bo6g079450 I
Bo8g097830 Brassica oleracea Bo8g097830 I
Bra003500 Brassica rapa Bra003500 I
Bra007679 Brassica rapa Bra007679 I
Bra039631 Brassica rapa Bra039631 I
BRADI2G38380 Brachypodium distachyon BRADI2G38380 N
Cagra.0483s0006 Capsella grandiflora Cagra.0483s0006 I
Carubv10018852m.g Capsella rubella Carubv10018852m.g I
cassava23775.valid.m1 Manihot esculenta cassava23775.valid.m1 I
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I
cassava36049.valid.m1 Manihot esculenta cassava36049.valid.m1 I
cassava40461.m1 Manihot esculenta cassava40461.m1 I
Ca_01004 Cicer arietinum Ca_01004 I
Ca_03512 Cicer arietinum Ca_03512 I
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N
Ciclev10022730m.g Citrus clementina Ciclev10022730m.g I
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I
Cla016841 Citrullus lanatus Cla016841 I
Cucsa.109420 Cucumis sativus Cucsa.109420 I
Eucgr.G01645 Eucalyptus grandis Eucgr.G01645 N
Eucgr.L01789 Eucalyptus grandis Eucgr.L01789 N
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I
ATBZIP53 Arabidopsis lyrata fgenesh2_kg.5__2740__AT3G62420.1 I
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I
GLYMA03G37790 Glycine max GLYMA03G37790 I
GLYMA11G12240 Glycine max GLYMA11G12240 I
GLYMA12G04440 Glycine max GLYMA12G04440 I
GLYMA19G40390 Glycine max GLYMA19G40390 I
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I
Gorai.008G065300 Gossypium raimondii Gorai.008G065300 I
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I
Lus10010005.g Linum usitatissimum Lus10010005.g I
Lus10040428.g Linum usitatissimum Lus10040428.g I
MDP0000205823 Malus domestica MDP0000205823 I
MDP0000234798 Malus domestica MDP0000234798 I
MDP0000239026 Malus domestica MDP0000239026 I
MDP0000437680 Malus domestica MDP0000437680 I
MDP0000949327 Malus domestica MDP0000949327 I
mgf003466m Mimulus guttatus mgf003466m I
mgf018581m Mimulus guttatus mgf018581m I
mgf022473m Mimulus guttatus mgf022473m N
MTR_1g087040 Medicago truncatula MTR_1g087040 I
orange1.1g032187m.g Citrus sinensis orange1.1g032187m.g I
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N
PGSC0003DMG400003529 Solanum tuberosum PGSC0003DMG400003529 I
PGSC0003DMG400022589 Solanum tuberosum PGSC0003DMG400022589 I
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I
PK03779.1 Cannabis sativa PK03779.1 I
PK07533.1 Cannabis sativa PK07533.1 I
POPTR_0002s19720 Populus trichocarpa POPTR_0002s19720 I
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I
POPTR_0014s11590 Populus trichocarpa POPTR_0014s11590 I
PRUPE_ppa013046mg Prunus persica PRUPE_ppa013046mg I
SapurV1A.0158s0220 Salix purpurea SapurV1A.0158s0220 I
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I
SapurV1A.0432s0050 Salix purpurea SapurV1A.0432s0050 I
SapurV1A.3521s0020 Salix purpurea SapurV1A.3521s0020 I
Si023562m.g Setaria italica Si023562m.g N
Solyc01g109880.2 Solanum lycopersicum Solyc01g109880.2 I
Solyc02g084860.1 Solanum lycopersicum Solyc02g084860.1 I
Solyc03g033730.1 Solanum lycopersicum Solyc03g033730.1 I
TCM_004807 Theobroma cacao TCM_004807 I
Thhalv10006418m.g Eutrema salsugineum Thhalv10006418m.g I
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I