Genemark1.7281_g (Coccomyxa subellipsoidea C169)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Genemark1.7281_g T321144_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.731 0.731
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
58252 RWP-RK 1 26

Links

Other RWP-RK family TFs
Other Coccomyxa subellipsoidea C169 TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RKD1 Arabidopsis thaliana AT1G18790 I 0.808
RKD4 Arabidopsis thaliana AT5G53040 N 0.769
Bra008153 Brassica rapa Bra008153 I 0.731
Cla019404 Citrullus lanatus Cla019404 I 0.769
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.808
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.731
GLYMA04G41320 Glycine max GLYMA04G41320 N 0.731
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.808
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.769
MDP0000266172 Malus domestica MDP0000266172 I 0.769
mg020279m Mimulus guttatus mg020279m I 0.769
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.731
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.731
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.731
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N 0.769
Si005102m.g Setaria italica Si005102m.g N 0.731
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.731
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.731
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.731