Bra039779 (Brassica rapa)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 Bra039779 T321358_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039779.1-P S1FA 732 797

Links

Other S1FA family TFs
Other Brassica rapa TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N
SIGA Arabidopsis thaliana AT1G64860 N
BGIOSGA028041 Oryza indica BGIOSGA028041 N
Bo2g097550 Brassica oleracea Bo2g097550 N
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N
Bra008513 Brassica rapa Bra008513 N
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N
Carubv10020145m.g Capsella rubella Carubv10020145m.g N
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N
Ca_22622 Cicer arietinum Ca_22622 N
Ca_22625 Cicer arietinum Ca_22625 N
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N
Cla006897 Citrullus lanatus Cla006897 N
Cucsa.073340 Cucumis sativus Cucsa.073340 N
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N
F775_32229 Aegilops tauschii F775_32229 N
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N
GLYMA09G35750 Glycine max GLYMA09G35750 N
GLYMA12G01600 Glycine max GLYMA12G01600 N
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N
GRMZM2G006736 Zea mays GRMZM2G006736 N
GRMZM2G543629 Zea mays GRMZM2G543629 N
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N
LPERR08G03850 Leersia perrieri LPERR08G03850 N
Lus10020365.g Linum usitatissimum Lus10020365.g N
MDP0000934360 Malus domestica MDP0000934360 N
MDP0000939377 Malus domestica MDP0000939377 N
mgf004750m Mimulus guttatus mgf004750m N
mgf015154m Mimulus guttatus mgf015154m N
mgf016433m Mimulus guttatus mgf016433m N
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N
OB08G14150 Oryza brachyantha OB08G14150 N
OBART08G03910 Oryza barthii OBART08G03910 N
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N
OLONG_000145 Oryza longistaminata OLONG_000145 N
OMERI08G04040 Oryza meridionalis OMERI08G04040 N
ONIVA08G03880 Oryza nivara ONIVA08G03880 N
OPUNC08G03810 Oryza punctata OPUNC08G03810 N
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N
OS08G0163400 Oryza sativa OS08G0163400 N
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N
Pavir.J39657 Panicum virgatum Pavir.J39657 N
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N
PK03826.1 Cannabis sativa PK03826.1 N
Pm019567 Prunus mume Pm019567 N
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N
Sb07g004340 Sorghum bicolor Sb07g004340 N
SIGA Arabidopsis lyrata scaffold_200883.1 N
Si013608m.g Setaria italica Si013608m.g N
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N
TCM_025640 Theobroma cacao TCM_025640 N
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N
TRIUR3_34525 Triticum urartu TRIUR3_34525 N
SIGA Vitis vinifera VIT_16s0039g00660 N