CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA19G36350
(
Glycine max
)
S1FA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04689 (S1FA)
IPR006779
GLYMA19G36350
T321378_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
S1FA3
M07252_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT3G09735_col_a
0.788
0.788
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA19G36350.1
S1FA
24
89
DSGSKAFNPGLIVLLVVGGLLLTFLIGNYVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE
Links
Other
S1FA
family TFs
Other
Glycine max
TFs
104 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA026545
Oryza indica
BGIOSGA026545
N
GRMZM2G124011
Zea mays
GRMZM2G124011
I
GRMZM2G175856
Zea mays
GRMZM2G175856
N
OGLUM08G23770
Oryza glumaepatula
OGLUM08G23770
N
OPUNC09G15260
Oryza punctata
OPUNC09G15260
I
ORGLA08G0220100
Oryza glaberrima
ORGLA08G0220100
I
ORGLA08G0220200
Oryza glaberrima
ORGLA08G0220200
N
Pavir.Fa00114
Panicum virgatum
Pavir.Fa00114
N
Pavir.J32829
Panicum virgatum
Pavir.J32829
N
Sb07g025210
Sorghum bicolor
Sb07g025210
N