Cagra.2515s0064 (Capsella grandiflora)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Cagra.2515s0064 T321487_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.955 0.955
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2515s0064.1.p S1FA 8 73

Links

Other S1FA family TFs
Other Capsella grandiflora TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
REM19 Arabidopsis thaliana AT1G49480 D
Bo5g076230 Brassica oleracea Bo5g076230 I
Bo8g011550 Brassica oleracea Bo8g011550 I
Bostr.26675s0223 Boechera stricta Bostr.26675s0223 I
Bra014192 Brassica rapa Bra014192 I
Bra032286 Brassica rapa Bra032286 I
Cagra.4084s0003 Capsella grandiflora Cagra.4084s0003 I
Carubv10010224m.g Capsella rubella Carubv10010224m.g I
GLYMA07G21160 Glycine max GLYMA07G21160 I
Gorai.013G039800 Gossypium raimondii Gorai.013G039800 I
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I
RTV1 Arabidopsis lyrata scaffold_104641.1 I
TCM_037983 Theobroma cacao TCM_037983 I