Carubv10005638m.g (Capsella rubella)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 Carubv10005638m.g T322239_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10005638m SAND 30 117

Links

Other SAND family TFs
Other Capsella rubella TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ULT2 Arabidopsis thaliana AT2G20825 N 0.854
ULT1 Arabidopsis thaliana AT4G28190 N 0.961
Bo00902s070 Brassica oleracea Bo00902s070 N 0.880
Bo1g051270 Brassica oleracea Bo1g051270 N 0.989
Bo7g111950 Brassica oleracea Bo7g111950 N 0.988
Bostr.7867s0654 Boechera stricta Bostr.7867s0654 N 0.992
Bostr.7903s0074 Boechera stricta Bostr.7903s0074 N 0.862
Bra024219 Brassica rapa Bra024219 N 0.949
Bra026276 Brassica rapa Bra026276 N 0.987
Bra036504 Brassica rapa Bra036504 N 0.880
Cagra.1225s0078 Capsella grandiflora Cagra.1225s0078 N 0.993
Cagra.20132s0010 Capsella grandiflora Cagra.20132s0010 N 0.860
cassava12533.valid.m1 Manihot esculenta cassava12533.valid.m1 N 0.935
cassava18740.valid.m1 Manihot esculenta cassava18740.valid.m1 N 0.973
Ca_19014 Cicer arietinum Ca_19014 N 0.892
chr3.CM0711.550.nd Lotus japonicus chr3.CM0711.550.nd N 0.904
evm.TU.supercontig_34.111 Carica papaya evm.TU.supercontig_34.111 N 0.944
ULT1 Arabidopsis lyrata fgenesh2_kg.7__1389__AT4G28190.1 N 0.990
gene10278-v1.0-hybrid Fragaria vesca gene10278-v1.0-hybrid N 0.851
GLYMA06G45180 Glycine max GLYMA06G45180 N 0.973
GLYMA12G11800 Glycine max GLYMA12G11800 N 0.974
Gorai.008G152400 Gossypium raimondii Gorai.008G152400 N 0.906
MDP0000237588 Malus domestica MDP0000237588 N 0.943
MDP0000315130 Malus domestica MDP0000315130 N 0.943
MTR_2g090080 Medicago truncatula MTR_2g090080 N 0.900
PGSC0003DMG400018322 Solanum tuberosum PGSC0003DMG400018322 N 0.946
Pm015354 Prunus mume Pm015354 N 0.945
POPTR_0013s14170 Populus trichocarpa POPTR_0013s14170 N 0.939
POPTR_0019s13550 Populus trichocarpa POPTR_0019s13550 N 0.914
PRUPE_ppa017439mg Prunus persica PRUPE_ppa017439mg N 0.943
SapurV1A.0048s0510 Salix purpurea SapurV1A.0048s0510 N 0.948
SapurV1A.0492s0170 Salix purpurea SapurV1A.0492s0170 N 0.908
SapurV1A.2807s0020 Salix purpurea SapurV1A.2807s0020 N 0.938
Solyc07g054450.2 Solanum lycopersicum Solyc07g054450.2 N 0.943
TCM_007971 Theobroma cacao TCM_007971 N 0.909
Thhalv10002089m.g Eutrema salsugineum Thhalv10002089m.g N 0.847
VIT_12s0059g01980 Vitis vinifera VIT_12s0059g01980 N 0.941