GLYMA17G08840 (Glycine max)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GLYMA17G08840 T322595_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.951 0.733
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.908 0.800
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.901 0.720
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.901 0.720
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.901 0.720
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.898 0.693
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.895 0.667
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.893 0.720
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.892 0.733
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.889 0.707
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.888 0.720
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA17G08840.2 SBP 167 241

Links

Other SBP family TFs
Other Glycine max TFs

381 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003158 Ricinus communis 29983.m003158 I 0.000
30174.m008805 Ricinus communis 30174.m008805 I 0.924
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.000
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.920
Aquca_036_00099 Aquilegia coerulea Aquca_036_00099 N 0.000
SPL3 Arabidopsis thaliana AT2G33810 D 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.949
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.910
Bo2g062840 Brassica oleracea Bo2g062840 I 0.938
Bo3g027460 Brassica oleracea Bo3g027460 I 0.000
Bo4g042390 Brassica oleracea Bo4g042390 I 0.000
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.920
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.000
Bra005470 Brassica rapa Bra005470 I 0.000
Bra021880 Brassica rapa Bra021880 I 0.000
Bra038324 Brassica rapa Bra038324 I 0.940
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.900
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.000
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.000
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.930
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.000
Ca_16243 Cicer arietinum Ca_16243 I 0.000
Ca_24655 Cicer arietinum Ca_24655 I 0.975
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.904
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.892
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.886
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.977
Cla002263 Citrullus lanatus Cla002263 I 0.894
Cla009788 Citrullus lanatus Cla009788 I 0.890
Cla023735 Citrullus lanatus Cla023735 I 0.000
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.000
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.000
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.925
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.000
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.921
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.000
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.899
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.000
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.000
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.000
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.963
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.963
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.000
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.921
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.921
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.912
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.918
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.917
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.918
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.000
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.899
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.920
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.937
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.934
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.000
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.937
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.937
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.000
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.000
MDP0000142582 Malus domestica MDP0000142582 N 0.925
MDP0000156994 Malus domestica MDP0000156994 I 0.000
MDP0000158607 Malus domestica MDP0000158607 I 0.000
MDP0000589558 Malus domestica MDP0000589558 I 0.978
MDP0000861601 Malus domestica MDP0000861601 I 0.000
MDP0000865739 Malus domestica MDP0000865739 I 0.000
mgf001202m Mimulus guttatus mgf001202m I 0.000
mgf001295m Mimulus guttatus mgf001295m I 0.000
mgf016414m Mimulus guttatus mgf016414m I 0.000
mgf017351m Mimulus guttatus mgf017351m I 0.000
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.907
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.000
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.899
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.924
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.950
OBART04G20940 Oryza barthii OBART04G20940 I 0.949
OBART07G15570 Oryza barthii OBART07G15570 I 0.910
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.949
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.910
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.949
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.910
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.949
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.910
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.949
OPUNC07G14360 Oryza punctata OPUNC07G14360 N 0.000
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.977
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.886
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.949
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.949
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.910
SPL7 Oryza sativa OS04G0551500 I 0.949
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.900
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.000
PK26639.1 Cannabis sativa PK26639.1 I 0.000
Pm010075 Prunus mume Pm010075 I 0.926
Pm011381 Prunus mume Pm011381 I 0.000
Pm014154 Prunus mume Pm014154 I 0.907
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.914
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.919
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.928
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.924
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.907
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.926
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.000
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.000
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.924
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.973
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.914
Si032170m.g Setaria italica Si032170m.g I 0.915
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.911
TCM_005620 Theobroma cacao TCM_005620 I 0.921
TCM_029832 Theobroma cacao TCM_029832 I 0.000
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.000
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.907
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.907
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.921