POPTR_0002s14330 (Populus trichocarpa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 POPTR_0002s14330 T322947_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.941 0.760
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.932 0.733
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.922 0.707
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.922 0.707
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.922 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.906 0.707
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.901 0.693
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.898 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.898 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.898 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.897 0.680
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.895 0.707
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.887 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s14330.1 SBP 168 242

Links

Other SBP family TFs
Other Populus trichocarpa TFs

410 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008171 Calypte anna Aan_R008171 I 0.000
Afo_R004362 Aptenodytes forsteri Afo_R004362 I 0.000
Alligator_sinensis_CCG005573.1 Alligator sinensis Alligator_sinensis_CCG005573.1 I 0.000
BAC58028 Xenopus laevis BAC58028 I 0.000
Brh_R010009 Buceros rhinoceros Brh_R010009 I 0.000
Cmyd_10008669 Chelonia mydas Cmyd_10008669 I 0.000
CXXC5 Anolis carolinensis ENSACAG00000002186 I 0.000
ENSAMEG00000011210 Ailuropoda melanoleuca ENSAMEG00000011210 I 0.000
ENSAMEG00000011282 Ailuropoda melanoleuca ENSAMEG00000011282 I 0.000
ENSAMXG00000005579 Astyanax mexicanus ENSAMXG00000005579 I 0.000
ENSAMXG00000016016 Astyanax mexicanus ENSAMXG00000016016 I 0.000
ENSAMXG00000018855 Astyanax mexicanus ENSAMXG00000018855 I 0.000
ENSAMXG00000025596 Astyanax mexicanus ENSAMXG00000025596 I 0.000
ENSAPLG00000014751 Anas platyrhynchos ENSAPLG00000014751 I 0.000
ENSBTAG00000001751 Bos taurus ENSBTAG00000001751 I 0.000
CXXC5 Bos taurus ENSBTAG00000003986 I 0.000
ENSBTAP00000005204-D1 Bos grunniens ENSBTAP00000005204-D1 I 0.000
CXXC5 Canis familiaris ENSCAFG00000005714 I 0.000
TET3 Canis familiaris ENSCAFG00000008728 I 0.000
ENSCAFG00000031237 Canis familiaris ENSCAFG00000031237 I 0.000
ENSCJAG00000015701 Callithrix jacchus ENSCJAG00000015701 I 0.000
CXXC5 Cavia porcellus ENSCPOG00000001156 I 0.000
ENSCPOG00000021934 Cavia porcellus ENSCPOG00000021934 I 0.000
ENSCSAG00000004010 Chlorocebus sabaeus ENSCSAG00000004010 I 0.000
ENSCSAG00000013001 Chlorocebus sabaeus ENSCSAG00000013001 I 0.000
ENSCSAG00000015514 Chlorocebus sabaeus ENSCSAG00000015514 I 0.000
cxxc5b Danio rerio ENSDARG00000075735 I 0.000
cxxc4 Danio rerio ENSDARG00000077817 I 0.000
cxxc5a Danio rerio ENSDARG00000078865 I 0.000
CABZ01081359.1 Danio rerio ENSDARG00000104578 I 0.000
CXXC5 Dasypus novemcinctus ENSDNOG00000008161 I 0.000
TET3 Dasypus novemcinctus ENSDNOG00000047130 I 0.000
ENSDORG00000003728 Dipodomys ordii ENSDORG00000003728 I 0.000
CXXC5 Equus caballus ENSECAG00000016958 I 0.000
CXXC5 Erinaceus europaeus ENSEEUG00000008125 I 0.000
ENSETEG00000009591 Echinops telfairi ENSETEG00000009591 I 0.000
ENSFALG00000009467 Ficedula albicollis ENSFALG00000009467 I 0.000
CXXC5 Felis catus ENSFCAG00000010527 I 0.000
CXXC4 Homo sapiens ENSG00000168772 I 0.000
CXXC5 Homo sapiens ENSG00000171604 D 0.000
TET3 Homo sapiens ENSG00000187605 I 0.000
ENSGACG00000017555 Gasterosteus aculeatus ENSGACG00000017555 I 0.000
cxxc5a Gasterosteus aculeatus ENSGACG00000020657 I 0.000
CXXC5 Gallus gallus ENSGALG00000000884 I 0.000
CXXC5 Gorilla gorilla ENSGGOG00000014181 I 0.000
ENSGGOG00000028495 Gorilla gorilla ENSGGOG00000028495 I 0.000
ENSGMOG00000019280 Gadus morhua ENSGMOG00000019280 I 0.000
ENSGMOG00000019812 Gadus morhua ENSGMOG00000019812 I 0.000
ENSLACG00000003110 Latimeria chalumnae ENSLACG00000003110 I 0.000
ENSLACG00000011147 Latimeria chalumnae ENSLACG00000011147 I 0.000
CXXC5 Loxodonta africana ENSLAFG00000011784 I 0.000
ENSLAFG00000030012 Loxodonta africana ENSLAFG00000030012 I 0.000
ENSLOCG00000012594 Lepisosteus oculatus ENSLOCG00000012594 I 0.000
ENSLOCG00000012610 Lepisosteus oculatus ENSLOCG00000012610 I 0.000
ENSMEUG00000015364 Macropus eugenii ENSMEUG00000015364 I 0.000
CXXC5 Meleagris gallopavo ENSMGAG00000003042 I 0.000
CXXC5 Microcebus murinus ENSMICG00000002899 I 0.000
CXXC5 Myotis lucifugus ENSMLUG00000003056 I 0.000
ENSMLUG00000003691 Myotis lucifugus ENSMLUG00000003691 I 0.000
CXXC5 Macaca mulatta ENSMMUG00000001941 I 0.000
CXXC4 Macaca mulatta ENSMMUG00000011660 I 0.000
CXXC5 Monodelphis domestica ENSMODG00000011772 I 0.000
ENSMODG00000020651 Monodelphis domestica ENSMODG00000020651 I 0.000
ENSMPUG00000007806 Mustela putorius furo ENSMPUG00000007806 I 0.000
ENSMPUG00000009101 Mustela putorius furo ENSMPUG00000009101 I 0.000
ENSMPUG00000009175 Mustela putorius furo ENSMPUG00000009175 I 0.000
Tet3 Mus musculus ENSMUSG00000034832 I 0.000
Cxxc4 Mus musculus ENSMUSG00000044365 I 0.000
Cxxc5 Mus musculus ENSMUSG00000046668 I 0.000
ENSNLEG00000000317 Nomascus leucogenys ENSNLEG00000000317 I 0.000
ENSNLEG00000009189 Nomascus leucogenys ENSNLEG00000009189 I 0.000
ENSNLEG00000013306 Nomascus leucogenys ENSNLEG00000013306 I 0.000
ENSOANG00000008235 Ornithorhynchus anatinus ENSOANG00000008235 I 0.000
ENSOANG00000009530 Ornithorhynchus anatinus ENSOANG00000009530 I 0.000
ENSOARG00000010827 Ovis aries ENSOARG00000010827 I 0.000
ENSOARG00000012255 Ovis aries ENSOARG00000012255 I 0.000
ENSOCUG00000015536 Oryctolagus cuniculus ENSOCUG00000015536 I 0.000
TET3 Oryctolagus cuniculus ENSOCUG00000016640 I 0.000
CXXC5 Otolemur garnettii ENSOGAG00000024233 I 0.000
ENSOGAG00000026362 Otolemur garnettii ENSOGAG00000026362 I 0.000
ENSONIG00000005000 Oreochromis niloticus ENSONIG00000005000 I 0.000
ENSONIG00000017539 Oreochromis niloticus ENSONIG00000017539 I 0.000
ENSONIG00000020654 Oreochromis niloticus ENSONIG00000020654 I 0.000
CXXC5 Ochotona princeps ENSOPRG00000003163 I 0.000
cxxc5a Oryzias latipes ENSORLG00000006108 I 0.000
ENSORLG00000006474 Oryzias latipes ENSORLG00000006474 I 0.000
ENSP00000302543 Macaca fascicularis ENSP00000302543 I 0.000
ENSP00000378248 Macaca fascicularis ENSP00000378248 I 0.000
ENSP00000378248-D1 Bos grunniens ENSP00000378248-D1 I 0.000
ENSPANG00000011930 Papio anubis ENSPANG00000011930 I 0.000
ENSPANG00000024069 Papio anubis ENSPANG00000024069 I 0.000
CXXC5 Procavia capensis ENSPCAG00000001216 I 0.000
ENSPCAG00000002905 Procavia capensis ENSPCAG00000002905 I 0.000
ENSPFOG00000003666 Poecilia formosa ENSPFOG00000003666 I 0.000
ENSPFOG00000012064 Poecilia formosa ENSPFOG00000012064 I 0.000
ENSPFOG00000012083 Poecilia formosa ENSPFOG00000012083 I 0.000
ENSPFOG00000018974 Poecilia formosa ENSPFOG00000018974 I 0.000
ENSPFOG00000019888 Poecilia formosa ENSPFOG00000019888 I 0.000
ENSPPYG00000012286 Pongo abelii ENSPPYG00000012286 I 0.000
ENSPPYG00000014973 Pongo abelii ENSPPYG00000014973 I 0.000
ENSPPYG00000015845 Pongo abelii ENSPPYG00000015845 I 0.000
ENSPSIG00000010569 Pelodiscus sinensis ENSPSIG00000010569 I 0.000
ENSPSIG00000013782 Pelodiscus sinensis ENSPSIG00000013782 I 0.000
ENSPTRG00000016332 Pan troglodytes ENSPTRG00000016332 I 0.000
CXXC5 Pan troglodytes ENSPTRG00000017304 I 0.000
CXXC4 Pteropus vampyrus ENSPVAG00000001501 I 0.000
Cxxc5 Rattus norvegicus ENSRNOG00000003734 I 0.000
Tet3 Rattus norvegicus ENSRNOG00000011387 I 0.000
Cxxc5 Rattus norvegicus ENSRNOG00000032878 I 0.000
Cxxc4 Rattus norvegicus ENSRNOG00000045764 I 0.000
CXXC5 Sorex araneus ENSSARG00000013369 I 0.000
ENSSARG00000013794 Sorex araneus ENSSARG00000013794 I 0.000
ENSSHAG00000002308 Sarcophilus harrisii ENSSHAG00000002308 I 0.000
ENSSHAG00000012293 Sarcophilus harrisii ENSSHAG00000012293 I 0.000
TET3 Sus scrofa ENSSSCG00000008292 I 0.000
ENSSSCG00000009159 Sus scrofa ENSSSCG00000009159 I 0.000
ENSSSCG00000014357 Sus scrofa ENSSSCG00000014357 I 0.000
CXXC4 Sus scrofa ENSSSCG00000025621 I 0.000
ENSSTOG00000020058 Ictidomys tridecemlineatus ENSSTOG00000020058 I 0.000
ENSSTOG00000025994 Ictidomys tridecemlineatus ENSSTOG00000025994 I 0.000
CXXC5 Tupaia belangeri ENSTBEG00000006970 I 0.000
CXXC5 Taeniopygia guttata ENSTGUG00000001608 I 0.000
ENSTGUG00000003779 Taeniopygia guttata ENSTGUG00000003779 I 0.000
cxxc5b Tetraodon nigroviridis ENSTNIG00000000647 I 0.000
ENSTNIG00000018036 Tetraodon nigroviridis ENSTNIG00000018036 I 0.000
cxxc4 Takifugu rubripes ENSTRUG00000004403 I 0.000
cxxc5a Takifugu rubripes ENSTRUG00000017014 I 0.000
ENSTRUG00000017756 Takifugu rubripes ENSTRUG00000017756 I 0.000
CXXC5 Tursiops truncatus ENSTTRG00000003771 I 0.000
CXXC4 Tursiops truncatus ENSTTRG00000011432 I 0.000
ENSVPAG00000010751 Vicugna pacos ENSVPAG00000010751 I 0.000
ENSXMAG00000005442 Xiphophorus maculatus ENSXMAG00000005442 I 0.000
ENSXMAG00000011127 Xiphophorus maculatus ENSXMAG00000011127 I 0.000
Gfo_R011184 Geospiza fortis Gfo_R011184 I 0.000
Myotis_brandtii_cxxc4_10005165 Myotis brandtii Myotis_brandtii_cxxc4_10005165 I 0.000
Myotis_brandtii_Cxxc4_10030627 Myotis brandtii Myotis_brandtii_Cxxc4_10030627 I 0.000
Myotis_brandtii_CXXC5_10027816 Myotis brandtii Myotis_brandtii_CXXC5_10027816 I 0.000
Ogr13317 Ophisaurus gracilis Ogr13317 I 0.000
Pvit_06919 Pogona vitticeps Pvit_06919 I 0.000
Pvit_12827 Pogona vitticeps Pvit_12827 I 0.000
Sakowv30045758m.g Saccoglossus kowalevskii Sakowv30045758m.g I 0.000
cxxc4 Xenopus tropicalis XB-GENE-479477 I 0.000