Gorai.011G029400 (Gossypium raimondii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Gorai.011G029400 T323516_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.984 0.840
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.984 0.840
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.984 0.840
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.950 0.787
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.943 0.840
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.942 0.747
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.942 0.747
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.942 0.747
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.941 0.733
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.940 0.733
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.937 0.733
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.937 0.733
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.937 0.733
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.937 0.733
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.933 0.747
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.929 0.747
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.929 0.747
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.929 0.747
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.929 0.693
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.922 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G029400.1 SBP 110 184
Gorai.011G029400.2 SBP 61 135

Links

Other SBP family TFs
Other Gossypium raimondii TFs

418 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27751.m000169 Ricinus communis 27751.m000169 N 0.000
ORG2 Arabidopsis thaliana AT3G56970 N 0.000
Bo01495s010 Brassica oleracea Bo01495s010 N 0.000
Bo4g112570 Brassica oleracea Bo4g112570 N 0.000
Bo4g112590 Brassica oleracea Bo4g112590 N 0.000
Bo6g072500 Brassica oleracea Bo6g072500 N 0.000
Bo6g072510 Brassica oleracea Bo6g072510 N 0.000
Bo7g039170 Brassica oleracea Bo7g039170 N 0.000
Bostr.20505s0055 Boechera stricta Bostr.20505s0055 N 0.000
Bostr.20505s0056 Boechera stricta Bostr.20505s0056 N 0.000
Bra003260 Brassica rapa Bra003260 N 0.000
Bra003261 Brassica rapa Bra003261 N 0.000
Bra014654 Brassica rapa Bra014654 N 0.000
Bra014657 Brassica rapa Bra014657 N 0.000
Bra014658 Brassica rapa Bra014658 N 0.000
Bra014971 Brassica rapa Bra014971 N 0.000
Cagra.0578s0027 Capsella grandiflora Cagra.0578s0027 N 0.000
Cagra.0578s0028 Capsella grandiflora Cagra.0578s0028 N 0.000
Carubv10017770m.g Capsella rubella Carubv10017770m.g N 0.000
Carubv10019130m.g Capsella rubella Carubv10019130m.g N 0.000
Cucsa.371810 Cucumis sativus Cucsa.371810 N 0.000
BHLH039 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001751 N 0.000
MDP0000641681 Malus domestica MDP0000641681 N 0.000
Pm028948 Prunus mume Pm028948 N 0.000
Pm031098 Prunus mume Pm031098 N 0.000
POPTR_0006s03560 Populus trichocarpa POPTR_0006s03560 N 0.000
POPTR_0006s03590 Populus trichocarpa POPTR_0006s03590 N 0.000
POPTR_0016s03680 Populus trichocarpa POPTR_0016s03680 N 0.000
SapurV1A.0159s0010 Salix purpurea SapurV1A.0159s0010 N 0.000
SapurV1A.0196s0420 Salix purpurea SapurV1A.0196s0420 N 0.000
SapurV1A.0196s0430 Salix purpurea SapurV1A.0196s0430 N 0.000
Thhalv10006191m.g Eutrema salsugineum Thhalv10006191m.g N 0.000
VIT_08s0007g05300 Vitis vinifera VIT_08s0007g05300 N 0.000