MDP0000119458 (Malus domestica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 MDP0000119458 T323551_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.907 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000119458 SBP 146 220

Links

Other SBP family TFs
Other Malus domestica TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004627 Ricinus communis 29929.m004627 I 0.901
30138.m003942 Ricinus communis 30138.m003942 I 0.967
30174.m009082 Ricinus communis 30174.m009082 I 0.967
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.913
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.967
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.961
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.910
SPL6 Arabidopsis thaliana AT1G69170 I 0.973
SPL13A Arabidopsis thaliana AT5G50570 I 0.907
SPL13A Arabidopsis thaliana AT5G50670 D 0.907
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.930
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.907
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.887
Bo2g062840 Brassica oleracea Bo2g062840 I 0.972
Bo3g024180 Brassica oleracea Bo3g024180 I 0.907
Bo3g042890 Brassica oleracea Bo3g042890 I 0.945
Bo6g108620 Brassica oleracea Bo6g108620 N 0.956
Bo9g097630 Brassica oleracea Bo9g097630 I 0.903
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.942
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.899
Bra004363 Brassica rapa Bra004363 N 0.956
Bra022766 Brassica rapa Bra022766 I 0.904
Bra038324 Brassica rapa Bra038324 I 0.971
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.907
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.921
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.898
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.907
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.966
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.966
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.907
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.894
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.964
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.904
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.963
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.904
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.960
Ca_01426 Cicer arietinum Ca_01426 I 0.891
Ca_05711 Cicer arietinum Ca_05711 I 0.889
Ca_19449 Cicer arietinum Ca_19449 I 0.967
Ca_24655 Cicer arietinum Ca_24655 I 0.958
Ca_24733 Cicer arietinum Ca_24733 I 0.904
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.970
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.954
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.903
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.900
Cla001541 Citrullus lanatus Cla001541 I 0.940
Cla002666 Citrullus lanatus Cla002666 I 0.898
Cla004156 Citrullus lanatus Cla004156 I 0.905
Cla018827 Citrullus lanatus Cla018827 I 0.965
Cla019331 Citrullus lanatus Cla019331 I 0.968
Cla021411 Citrullus lanatus Cla021411 I 0.915
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.905
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.968
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.967
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.907
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.940
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.898
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.978
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.952
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.896
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.919
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.904
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.910
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.971
F775_02791 Aegilops tauschii F775_02791 I 0.936
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.976
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.977
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.889
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.978
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.967
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.971
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.971
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.896
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.967
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.891
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.896
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.891
GLYMA06G22545 Glycine max GLYMA06G22545 N 0.909
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.896
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.900
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.886
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.927
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.967
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.932
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.926
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.978
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.905
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.894
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.909
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.920
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.961
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.898
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.930
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.906
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.937
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.907
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.925
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.914
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.915
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.909
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.890
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.914
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.916
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.906
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.943
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.939
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.916
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.944
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.914
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.913
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.945
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.930
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.898
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.892
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.954
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.971
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.966
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.894
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.901
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.894
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.968
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.968
MDP0000142582 Malus domestica MDP0000142582 N 0.924
MDP0000146640 Malus domestica MDP0000146640 I 0.967
MDP0000171877 Malus domestica MDP0000171877 I 0.976
MDP0000193702 Malus domestica MDP0000193702 I 0.986
MDP0000246046 Malus domestica MDP0000246046 I 0.976
MDP0000589558 Malus domestica MDP0000589558 I 0.950
MDP0000778465 Malus domestica MDP0000778465 I 0.967
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.914
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.930
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.936
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.967
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.891
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.967
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.942
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.961
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.889
OB04G27960 Oryza brachyantha OB04G27960 I 0.907
OBART01G42150 Oryza barthii OBART01G42150 I 0.908
OBART04G20940 Oryza barthii OBART04G20940 I 0.907
OBART07G15570 Oryza barthii OBART07G15570 I 0.887
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.930
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.907
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.887
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.896
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.930
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.907
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.896
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.887
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.961
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.930
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.907
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.887
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.930
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.907
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.970
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.954
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.903
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.900
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.930
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.907
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.887
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.968
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.930
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.907
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.887
OS01G0922600 Oryza sativa OS01G0922600 I 0.920
SPL7 Oryza sativa OS04G0551500 I 0.907
SPL16 Oryza sativa OS08G0531600 I 0.896
SPL19 Oryza sativa OS11G0496600 I 0.968
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.938
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.958
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.899
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.938
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.958
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.958
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.938
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.938
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.943
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.956
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.964
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.940
PK02140.1 Cannabis sativa PK02140.1 I 0.898
PK03565.1 Cannabis sativa PK03565.1 I 0.942
PK17790.1 Cannabis sativa PK17790.1 I 0.964
PK19500.1 Cannabis sativa PK19500.1 I 0.917
Pm024528 Prunus mume Pm024528 I 0.898
Pm025028 Prunus mume Pm025028 I 0.976
Pm030597 Prunus mume Pm030597 I 0.978
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.895
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.965
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.968
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.898
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.965
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.899
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.978
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.898
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.978
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.968
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.892
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.973
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.941
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.896
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.898
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.933
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.945
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.887
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.914
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.934
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.934
Si001804m.g Setaria italica Si001804m.g I 0.958
Si010262m.g Setaria italica Si010262m.g I 0.933
Si013747m.g Setaria italica Si013747m.g N 0.938
Si026656m.g Setaria italica Si026656m.g I 0.958
Si032170m.g Setaria italica Si032170m.g I 0.887
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.964
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.940
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.943
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.956
TCM_008671 Theobroma cacao TCM_008671 I 0.909
TCM_011483 Theobroma cacao TCM_011483 I 0.976
TCM_014330 Theobroma cacao TCM_014330 I 0.967
TCM_014668 Theobroma cacao TCM_014668 I 0.906
TCM_017247 Theobroma cacao TCM_017247 N 0.889
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.903
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.966
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.936
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.936
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.914
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.914
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.900
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.972
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.907
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.889
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.968