OMERI08G04040 (Oryza meridionalis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 OMERI08G04040 T323909_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI08G04040.1 Sigma 70 286 356
OMERI08G04040.2 Sigma 70 286 356
OMERI08G04040.3 Sigma 70 179 249
OMERI08G04040.4 Sigma 70 286 356

Links

Other Sigma 70 family TFs
Other Oryza meridionalis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30148.m001468 Ricinus communis 30148.m001468 N 0.831
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.831
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.803
SIGA Arabidopsis thaliana AT1G64860 N 0.817
BGIOSGA028041 Oryza indica BGIOSGA028041 N 1.000
Bo2g097550 Brassica oleracea Bo2g097550 N 0.803
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.803
Bra008513 Brassica rapa Bra008513 N 0.803
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.958
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.817
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.817
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.789
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.789
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.803
Ca_22622 Cicer arietinum Ca_22622 N 0.817
Ca_22625 Cicer arietinum Ca_22625 N 0.831
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.817
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.817
Cla006897 Citrullus lanatus Cla006897 N 0.817
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.817
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.803
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.831
F775_32229 Aegilops tauschii F775_32229 N 0.944
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.859
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.831
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.831
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.789
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.803
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.915
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.944
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.803
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.831
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.958
MDP0000934360 Malus domestica MDP0000934360 N 0.859
MDP0000939377 Malus domestica MDP0000939377 N 0.859
mgf004750m Mimulus guttatus mgf004750m N 0.789
mgf016433m Mimulus guttatus mgf016433m N 0.789
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.817
OB08G14150 Oryza brachyantha OB08G14150 N 0.986
OBART08G03910 Oryza barthii OBART08G03910 N 1.000
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 1.000
OLONG_000145 Oryza longistaminata OLONG_000145 N 1.000
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 1.000
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 1.000
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.803
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 1.000
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 1.000
OS08G0163400 Oryza sativa OS08G0163400 N 1.000
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.972
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.986
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.845
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.789
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.817
PK03826.1 Cannabis sativa PK03826.1 N 0.831
Pm019567 Prunus mume Pm019567 N 0.831
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.789
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.817
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.831
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.803
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.803
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.803
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.958
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.817
Si013608m.g Setaria italica Si013608m.g N 0.986
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.789
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.817
TCM_025640 Theobroma cacao TCM_025640 N 0.803
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.803
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.944
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.732
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.944
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.944
SIGA Vitis vinifera VIT_16s0039g00660 N 0.817