Pavir.Ia00050 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Ia00050 T324230_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia00050.1.p Sigma 70 322 392
Pavir.Ia00050.2.p Sigma 70 322 392

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27996.m000153 Ricinus communis 27996.m000153 N
AMTR_s00011p00235740 Amborella trichopoda AMTR_s00011p00235740 N
cassava27522.m1 Manihot esculenta cassava27522.m1 N
cassava8426.m1 Manihot esculenta cassava8426.m1 N
Ca_13608 Cicer arietinum Ca_13608 N
Ca_13610 Cicer arietinum Ca_13610 N
Cla020055 Citrullus lanatus Cla020055 N
Cucsa.167440 Cucumis sativus Cucsa.167440 N
Eucgr.D01630 Eucalyptus grandis Eucgr.D01630 N
evm.TU.supercontig_489.5 Carica papaya evm.TU.supercontig_489.5 N
evm.TU.supercontig_489.6 Carica papaya evm.TU.supercontig_489.6 N
gene18542-v1.0-hybrid Fragaria vesca gene18542-v1.0-hybrid N
GLYMA08G17747 Glycine max GLYMA08G17747 N
GLYMA15G41400 Glycine max GLYMA15G41400 N
Gorai.002G107000 Gossypium raimondii Gorai.002G107000 N
Gorai.005G218900 Gossypium raimondii Gorai.005G218900 N
MDP0000209483 Malus domestica MDP0000209483 N
MDP0000216053 Malus domestica MDP0000216053 N
MDP0000280921 Malus domestica MDP0000280921 N
MTR_1g060700 Medicago truncatula MTR_1g060700 N
MTR_2g067000 Medicago truncatula MTR_2g067000 N
Pm010610 Prunus mume Pm010610 N
POPTR_0001s46530 Populus trichocarpa POPTR_0001s46530 N
POPTR_0011s16100 Populus trichocarpa POPTR_0011s16100 N
PRUPE_ppa017597mg Prunus persica PRUPE_ppa017597mg N
PRUPE_ppa025945mg Prunus persica PRUPE_ppa025945mg N
SapurV1A.0527s0040 Salix purpurea SapurV1A.0527s0040 N
SapurV1A.0602s0120 Salix purpurea SapurV1A.0602s0120 N
TCM_027032 Theobroma cacao TCM_027032 N
TCM_033386 Theobroma cacao TCM_033386 N
Thhalv10009765m.g Eutrema salsugineum Thhalv10009765m.g N
VIT_10s0092g00030 Vitis vinifera VIT_10s0092g00030 N