Afo_R010787 (Aptenodytes forsteri)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Afo_R010787 T325258_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.989 0.989
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.989 0.989
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.989 0.989
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.989 0.989
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.989 0.989
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.989 0.989
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.923 0.923
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.923 0.923
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.923 0.923
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.923 0.923
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.923 0.923
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.923 0.923
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.912 0.912
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.912 0.912
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.912 0.912
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.912 0.912
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.912 0.912
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.912 0.912
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.813 0.813
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.802 0.802
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.802 0.802
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.802 0.802
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.802 0.802
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.802 0.802
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.802 0.802
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.802 0.802
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.802 0.802
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R010787 SMAD 60 164

Links

Other SMAD family TFs
Other Aptenodytes forsteri TFs

331 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
REL1B Aedes aegypti AAEL006930 I 0.000
REL1A Aedes aegypti AAEL007696 I 0.000
AARA011865 Anopheles arabiensis AARA011865 I 0.000
AATE006484 Anopheles atroparvus AATE006484 I 0.000
ACEP24572 Atta cephalotes ACEP24572 I 0.000
ACHR009253 Anopheles christyi ACHR009253 I 0.000
ACOM032427 Anopheles coluzzii ACOM032427 I 0.000
ACUA016711 Anopheles culicifacies ACUA016711 I 0.000
ACYPI005133 Acyrthosiphon pisum ACYPI005133 I 0.000
ADAC001392 Anopheles darlingi ADAC001392 I 0.000
ADIR006013 Anopheles dirus ADIR006013 I 0.000
AEPI001360 Anopheles epiroticus AEPI001360 I 0.000
AFAF001010 Anopheles farauti AFAF001010 I 0.000
AFUN005302 Anopheles funestus AFUN005302 I 0.000
REL1 Anopheles gambiae AGAP009515 I 0.000
AMEC000206 Anopheles melas AMEC000206 I 0.000
AMEM007632 Anopheles merus AMEM007632 I 0.000
AMIN001887 Anopheles minimus AMIN001887 I 0.000
AQUA005813 Anopheles quadriannulatus AQUA005813 I 0.000
ASTEI03826 Anopheles stephensi ASTEI03826 I 0.000
Cflo_08314--NP_001011577.1_APIME Camponotus floridanus Cflo_08314--NP_001011577.1_APIME I 0.000
CLEC006384 Cimex lectularius CLEC006384 I 0.000
CPIJ002469 Culex quinquefasciatus CPIJ002469 I 0.000
CPIJ015741 Culex quinquefasciatus CPIJ015741 I 0.000
CPIJ019376 Culex quinquefasciatus CPIJ019376 I 0.000
CpipJ_CPIJ002469 Culex pipiens CpipJ_CPIJ002469 I 0.000
CpipJ_CPIJ015741 Culex pipiens CpipJ_CPIJ015741 I 0.000
CpipJ_CPIJ019376 Culex pipiens CpipJ_CPIJ019376 I 0.000
DAPPUDRAFT_52849 Daphnia pulex DAPPUDRAFT_52849 I 0.000
dl Drosophila yakuba FBgn0067431 I 0.000
dl Drosophila simulans FBgn0067500 I 0.000
GA19765 Drosophila pseudoobscura FBgn0079761 I 0.000
GF15103 Drosophila ananassae FBgn0092128 I 0.000
GG21746 Drosophila erecta FBgn0113924 I 0.000
GH10077 Drosophila grimshawi FBgn0117558 I 0.000
GI16541 Drosophila mojavensis FBgn0139289 I 0.000
GL18753 Drosophila persimilis FBgn0156354 I 0.000
GM17128 Drosophila sechellia FBgn0172039 I 0.000
GJ16232 Drosophila virilis FBgn0203417 I 0.000
GK10525 Drosophila willistoni FBgn0212540 I 0.000
dl Drosophila melanogaster FBgn0260632 D 0.000
GB44031 Apis mellifera GB44031 I 0.000
Hsal_01917--NP_001011577.1_APIME Harpegnathos saltator Hsal_01917--NP_001011577.1_APIME I 0.000
L798_11048 Zootermopsis nevadensis L798_11048 I 0.000
LCUP010246 Lucilia cuprina LCUP010246 I 0.000
LDEC008474 Leptinotarsa decemlineata LDEC008474 I 0.000
MDOA008285 Musca domestica MDOA008285 I 0.000
PHUM534140 Pediculus humanus PHUM534140 I 0.000
PPAI001149 Phlebotomus papatasi PPAI001149 I 0.000
SINV14836 Solenopsis invicta SINV14836 I 0.000
tetur11g04270 Tetranychus urticae tetur11g04270 I 0.000