fgenesh2_pg.scaffold_121000044 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_121000044 T334139_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_121000044 Sox 712 779

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29589.m001269 Ricinus communis 29589.m001269 N 0.000
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N 0.000
Aquca_009_01096 Aquilegia coerulea Aquca_009_01096 N 0.000
BGIOSGA015622 Oryza indica BGIOSGA015622 N 0.000
BGIOSGA026480 Oryza indica BGIOSGA026480 N 0.000
BRADI3G12490 Brachypodium distachyon BRADI3G12490 N 0.000
cassava27114.m1 Manihot esculenta cassava27114.m1 N 0.000
cassava28521.m1 Manihot esculenta cassava28521.m1 N 0.000
Ca_07000 Cicer arietinum Ca_07000 N 0.000
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N 0.000
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N 0.000
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N 0.000
Cla001892 Citrullus lanatus Cla001892 N 0.000
Cucsa.200410 Cucumis sativus Cucsa.200410 N 0.000
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N 0.000
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N 0.000
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N 0.000
GLYMA11G19810 Glycine max GLYMA11G19810 N 0.000
GLYMA12G08680 Glycine max GLYMA12G08680 N 0.000
GLYMA12G30285 Glycine max GLYMA12G30285 N 0.000
GLYMA13G39610 Glycine max GLYMA13G39610 N 0.000
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N 0.000
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N 0.000
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N 0.000
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N 0.000
LPERR08G20460 Leersia perrieri LPERR08G20460 N 0.000
MDP0000224892 Malus domestica MDP0000224892 N 0.000
MDP0000610922 Malus domestica MDP0000610922 N 0.000
mgf025993m Mimulus guttatus mgf025993m N 0.000
OB08G30610 Oryza brachyantha OB08G30610 N 0.000
OBART04G02230 Oryza barthii OBART04G02230 N 0.000
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N 0.000
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N 0.000
OLONG_023180 Oryza longistaminata OLONG_023180 N 0.000
OMERI04G02190 Oryza meridionalis OMERI04G02190 N 0.000
OMERI08G18590 Oryza meridionalis OMERI08G18590 N 0.000
ONIVA08G18580 Oryza nivara ONIVA08G18580 N 0.000
OPUNC04G02200 Oryza punctata OPUNC04G02200 N 0.000
OPUNC08G21710 Oryza punctata OPUNC08G21710 N 0.000
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N 0.000
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N 0.000
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N 0.000
ORGLA08G0191700 Oryza glaberrima ORGLA08G0191700 N 0.000
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N 0.000
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N 0.000
OS08G0562300 Oryza sativa OS08G0562300 N 0.000
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N 0.000
Pavir.Fb02219 Panicum virgatum Pavir.Fb02219 N 0.000
PGSC0003DMG400000419 Solanum tuberosum PGSC0003DMG400000419 N 0.000
Pm001162 Prunus mume Pm001162 N 0.000
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N 0.000
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N 0.000
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N 0.000
Sb07g023890 Sorghum bicolor Sb07g023890 N 0.000
Si013894m.g Setaria italica Si013894m.g N 0.000
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N 0.000
TCM_041585 Theobroma cacao TCM_041585 N 0.000
TRIUR3_12142 Triticum urartu TRIUR3_12142 N 0.000
VIT_06s0061g00780 Vitis vinifera VIT_06s0061g00780 N 0.000