Bra028662 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra028662 T343789_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.967 0.597
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.967 0.597
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.965 0.558
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.953 0.512
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.952 0.504
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.952 0.488
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.952 0.481
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.950 0.488
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.950 0.473
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.950 0.473
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.947 0.488
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.945 0.481
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.945 0.481
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.945 0.481
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.945 0.481
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.934 0.434
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.933 0.395
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.932 0.403
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.930 0.481
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.929 0.450
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.926 0.419
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.926 0.419
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.926 0.419
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.926 0.388
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.926 0.411
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.926 0.411
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.925 0.426
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.923 0.411
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.923 0.411
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.923 0.411
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.923 0.411
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.922 0.419
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.915 0.380
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.867 0.395
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.867 0.395
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028662.1-P TCP 25 200

Links

Other TCP family TFs
Other Brassica rapa TFs

641 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004458 Calypte anna Aan_R004458 I 0.000
Afo_R011755 Aptenodytes forsteri Afo_R011755 I 0.000
Alligator_sinensis_CCG019865.1 Alligator sinensis Alligator_sinensis_CCG019865.1 I 0.000
Brh_R002160 Buceros rhinoceros Brh_R002160 I 0.000
Cmyd_10010595 Chelonia mydas Cmyd_10010595 I 0.000
Cmyd_10013831 Chelonia mydas Cmyd_10013831 I 0.000
ENSACAG00000012356 Anolis carolinensis ENSACAG00000012356 I 0.000
ENSAMEG00000006403 Ailuropoda melanoleuca ENSAMEG00000006403 I 0.000
ENSAMXG00000003461 Astyanax mexicanus ENSAMXG00000003461 I 0.000
ENSAMXG00000012874 Astyanax mexicanus ENSAMXG00000012874 I 0.000
ENSAMXG00000016240 Astyanax mexicanus ENSAMXG00000016240 I 0.000
ENSAPLG00000012971 Anas platyrhynchos ENSAPLG00000012971 I 0.000
KLF15 Bos taurus ENSBTAG00000008313 I 0.000
KLF15 Canis familiaris ENSCAFG00000003807 I 0.000
KLF15 Callithrix jacchus ENSCJAG00000006941 I 0.000
KLF15 Cavia porcellus ENSCPOG00000005315 I 0.000
ENSCSAG00000008037 Chlorocebus sabaeus ENSCSAG00000008037 I 0.000
si:ch211-117k10.3 Danio rerio ENSDARG00000090914 I 0.000
klf15 Danio rerio ENSDARG00000091127 I 0.000
KLF15 Dasypus novemcinctus ENSDNOG00000036157 I 0.000
ENSDORG00000016283 Dipodomys ordii ENSDORG00000016283 I 0.000
KLF15 Equus caballus ENSECAG00000021092 I 0.000
ENSFALG00000012601 Ficedula albicollis ENSFALG00000012601 I 0.000
KLF15 Homo sapiens ENSG00000163884 D 0.000
klf15 Gasterosteus aculeatus ENSGACG00000003717 I 0.000
KLF15 Gasterosteus aculeatus ENSGACG00000011317 I 0.000
ENSGALG00000006245 Gallus gallus ENSGALG00000006245 I 0.000
KLF15 Gorilla gorilla ENSGGOG00000009916 I 0.000
ENSGMOG00000000921 Gadus morhua ENSGMOG00000000921 I 0.000
ENSGMOG00000003751 Gadus morhua ENSGMOG00000003751 I 0.000
ENSLACG00000009512 Latimeria chalumnae ENSLACG00000009512 I 0.000
ENSLACG00000013240 Latimeria chalumnae ENSLACG00000013240 I 0.000
KLF15 Loxodonta africana ENSLAFG00000011970 I 0.000
ENSLOCG00000011807 Lepisosteus oculatus ENSLOCG00000011807 I 0.000
ENSLOCG00000013716 Lepisosteus oculatus ENSLOCG00000013716 I 0.000
KLF15 Meleagris gallopavo ENSMGAG00000007616 I 0.000
KLF15 Myotis lucifugus ENSMLUG00000010178 I 0.000
KLF15 Macaca mulatta ENSMMUG00000003721 I 0.000
ENSMPUG00000017390 Mustela putorius furo ENSMPUG00000017390 I 0.000
Klf15 Mus musculus ENSMUSG00000030087 D 0.000
ENSNLEG00000001047 Nomascus leucogenys ENSNLEG00000001047 I 0.000
KLF15 Ornithorhynchus anatinus ENSOANG00000014825 I 0.000
KLF15 Otolemur garnettii ENSOGAG00000000703 I 0.000
ENSONIG00000003215 Oreochromis niloticus ENSONIG00000003215 I 0.000
ENSONIG00000009164 Oreochromis niloticus ENSONIG00000009164 I 0.000
KLF15 Ochotona princeps ENSOPRG00000005237 I 0.000
klf15 Oryzias latipes ENSORLG00000001165 I 0.000
ENSP00000296233 Macaca fascicularis ENSP00000296233 I 0.000
ENSPANG00000026096 Papio anubis ENSPANG00000026096 I 0.000
KLF15 Procavia capensis ENSPCAG00000006301 I 0.000
ENSPFOG00000002472 Poecilia formosa ENSPFOG00000002472 I 0.000
ENSPFOG00000003698 Poecilia formosa ENSPFOG00000003698 I 0.000
ENSPFOG00000012815 Poecilia formosa ENSPFOG00000012815 I 0.000
ENSPPYG00000013455 Pongo abelii ENSPPYG00000013455 I 0.000
KLF15 Pteropus vampyrus ENSPVAG00000004109 I 0.000
Klf15 Rattus norvegicus ENSRNOG00000017808 I 0.000
ENSSHAG00000007635 Sarcophilus harrisii ENSSHAG00000007635 I 0.000
si:ch211-117k10.3 Tetraodon nigroviridis ENSTNIG00000007382 I 0.000
si:ch211-117k10.3 Takifugu rubripes ENSTRUG00000000076 I 0.000
KLF15 Takifugu rubripes ENSTRUG00000006529 I 0.000
klf15 Takifugu rubripes ENSTRUG00000014976 I 0.000
KLF15 Tursiops truncatus ENSTTRG00000008498 I 0.000
ENSXMAG00000001323 Xiphophorus maculatus ENSXMAG00000001323 I 0.000
ENSXMAG00000007908 Xiphophorus maculatus ENSXMAG00000007908 I 0.000
ENSXMAG00000013094 Xiphophorus maculatus ENSXMAG00000013094 I 0.000
Gfo_R014652 Geospiza fortis Gfo_R014652 I 0.000
gw.37.333.1 Branchiostoma floridae gw.37.333.1 I 0.000
gw.442.76.1 Branchiostoma floridae gw.442.76.1 I 0.000
Ogr01993 Ophisaurus gracilis Ogr01993 I 0.000
Ogr18174 Ophisaurus gracilis Ogr18174 I 0.000
Pvit_06090 Pogona vitticeps Pvit_06090 I 0.000
Pvit_11468 Pogona vitticeps Pvit_11468 I 0.000
Sakowv30044439m.g Saccoglossus kowalevskii Sakowv30044439m.g I 0.000
SMU15001129 Schmidtea mediterranea SMU15001129 I 0.000
SPU_015772 Strongylocentrotus purpuratus SPU_015772 I 0.000
Tal_R002960 Tyto alba Tal_R002960 I 0.000
Tal_R006156 Tyto alba Tal_R006156 I 0.000
klf15.2 Xenopus tropicalis XB-GENE-1018580 I 0.000
klf15 Xenopus tropicalis XB-GENE-854149 I 0.000
klf15.S Xenopus laevis XB-GENE-854150 I 0.000
XP_002161066.1 Hydra magnipapillata XP_002161066.1 I 0.000