CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OB01G51240 *(Oryza brachyantha)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	OB01G51240	T344052_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.950	0.961
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.950	0.961
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.950	0.961
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.950	0.961
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.947	0.961
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.932	0.961
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.931	0.843
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.930	0.824
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.930	0.961
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.928	0.961
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.922	0.804
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.911	0.902
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.911	0.902
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.911	0.902
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.909	0.863
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.909	0.863
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.909	0.824
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.909	0.824
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.908	0.843
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.908	0.843
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.908	0.843
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.908	0.843
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.904	0.863
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.904	0.863
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.904	0.863
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.904	0.863
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.892	0.824
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.892	0.804
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.878	0.784
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.878	0.784
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.878	0.784
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.865	0.725
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.865	0.725
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.825	0.745
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.825	0.745
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OB01G51240.1	TCP	83	142	SSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEXXXXXXXXX

Links
Other TCP family TFs
Other *Oryza brachyantha* TFs

649 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BBA_00521	Beauveria bassiana	BBA_00521	N	0.000
Bcin05g01760	Botrytis cinerea	Bcin05g01760	N	0.000
BGHDH14_bghG006987000001001	Blumeria graminis	BGHDH14_bghG006987000001001	N	0.000
CCM_00095	Cordyceps militaris	CCM_00095	N	0.000
CFIO01_08353	Colletotrichum fioriniae	CFIO01_08353	N	0.000
CGGC5_8845	Colletotrichum gloeosporioides	CGGC5_8845	N	0.000
CH063_03229	Colletotrichum higginsianum	CH063_03229	N	0.000
CHGG_00871	Chaetomium globosum	CHGG_00871	N	0.000
CMQ_4658	Grosmannia clavigera	CMQ_4658	N	0.000
Cob_13319	Colletotrichum orbiculare	Cob_13319	N	0.000
CPUR_00112	Claviceps purpurea	CPUR_00112	N	0.000
CSUB01_02897	Colletotrichum sublineola	CSUB01_02897	N	0.000
CTHT_0060550	Chaetomium thermophilum	CTHT_0060550	N	0.000
estExt_fgenesh3_kg.C_70275	Neurospora discreta	estExt_fgenesh3_kg.C_70275	N	0.000
estExt_Genewise1Plus.C_41039	Cryphonectria parasitica	estExt_Genewise1Plus.C_41039	N	0.000
F503_02843	Ophiostoma piceae uamh	F503_02843	N	0.000
FFUJ_00508	Fusarium fujikuroi	FFUJ_00508	N	0.000
fgenesh1_pg.sca_1_chr1_3_0000978	Nectria haematococca	fgenesh1_pg.sca_1_chr1_3_0000978	N	0.000
FGRRES_00729	Fusarium graminearum	FGRRES_00729	N	0.000
FOXG_01060	Fusarium oxysporum	FOXG_01060	N	0.000
FPSE_01400	Fusarium pseudograminearum	FPSE_01400	N	0.000
FVEG_00454	Fusarium verticillioides	FVEG_00454	N	0.000
GGTG_07805	Gaeumannomyces graminis	GGTG_07805	N	0.000
GLRG_00634	Colletotrichum graminicola	GLRG_00634	N	0.000
GMDG_02547	Pseudogymnoascus destructans	GMDG_02547	N	0.000
HMPREF1624_07501	Sporothrix schenckii	HMPREF1624_07501	N	0.000
M7I_8110	Glarea lozoyensis	M7I_8110	N	0.000
MAC_07492	Metarhizium acridum	MAC_07492	N	0.000
MAJ_07143	Metarhizium majus	MAJ_07143	N	0.000
MAM_03379	Metarhizium album	MAM_03379	N	0.000
MANI_019755	Metarhizium anisopliae	MANI_019755	N	0.000
MBM_03545	Marssonina brunnea	MBM_03545	N	0.000
MBR_08071	Metarhizium brunneum	MBR_08071	N	0.000
MGG_01325	Magnaporthe oryzae	MGG_01325	N	0.000
MGU_03640	Metarhizium guizhouense	MGU_03640	N	0.000
MYCTH_2296180	Myceliophthora thermophila	MYCTH_2296180	N	0.000
NCU03126	Neurospora crassa	NCU03126	N	0.000
NechaG75367	Fusarium solani	NechaG75367	N	0.000
NEUTE1DRAFT_150185	Neurospora tetrasperma	NEUTE1DRAFT_150185	N	0.000
OCS_05805	Ophiocordyceps sinensis	OCS_05805	N	0.000
OIDMADRAFT_43965	Oidiodendron maius	OIDMADRAFT_43965	N	0.000
PFICI_06243	Pestalotiopsis fici	PFICI_06243	N	0.000
PODANS_1_11050	Podospora anserina	PODANS_1_11050	N	0.000
S40285_08298	Stachybotrys chlorohalonata	S40285_08298	N	0.000
S40288_06952	Stachybotrys chartarum	S40288_06952	N	0.000
SAPIO_CDS5487	Scedosporium apiospermum	SAPIO_CDS5487	N	0.000
SBOR_0586	Sclerotinia borealis	SBOR_0586	N	0.000
SMAC_02857	Sordaria macrospora	SMAC_02857	N	0.000
SPBR_07025	Sporothrix brasiliensis	SPBR_07025	N	0.000
SS1G_05783	Sclerotinia sclerotiorum	SS1G_05783	N	0.000
THITE_2065779	Thielavia terrestris	THITE_2065779	N	0.000
TRIATDRAFT_302680	Trichoderma atroviride	TRIATDRAFT_302680	N	0.000
TRIREDRAFT_108909	Trichoderma reesei	TRIREDRAFT_108909	N	0.000
TRIVIDRAFT_208143	Trichoderma virens	TRIVIDRAFT_208143	N	0.000
TRIVIDRAFT_35357	Trichoderma virens	TRIVIDRAFT_35357	N	0.000
UCREL1_3474	Eutypa lata	UCREL1_3474	N	0.000
UCRPA7_6165	Togninia minima	UCRPA7_6165	N	0.000
UV8b_1930	Ustilaginoidea virens	UV8b_1930	N	0.000
V499_06192	Pseudogymnoascus pannorum	V499_06192	N	0.000
VDAG_00928	Verticillium dahliae	VDAG_00928	N	0.000
VHEMI05033	Torrubiella hemipterigena	VHEMI05033	N	0.000
X797_006248	Metarhizium robertsii	X797_006248	N	0.000

OB01G51240 (Oryza brachyantha) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

649 Related TFs

OB01G51240 **(Oryza brachyantha)
TCP**