CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

scaffold_600839.1 *(Arabidopsis lyrata)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	scaffold_600839.1	T344367_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.983	1.000
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.983	1.000
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.971	0.669
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.961	0.529
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.953	0.545
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.953	0.537
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.951	0.521
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.951	0.521
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.950	0.512
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.949	0.504
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.948	0.488
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.944	0.471
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.944	0.471
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.944	0.471
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.944	0.471
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.942	0.496
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.940	0.446
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.940	0.446
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.940	0.438
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.938	0.512
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.937	0.488
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.932	0.471
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.932	0.471
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.932	0.471
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.932	0.471
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.931	0.463
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.931	0.471
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.931	0.471
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.929	0.463
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.929	0.455
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.929	0.455
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.929	0.455
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.922	0.430
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.869	0.421
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.869	0.421
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
scaffold_600839.1	TCP	29	210	PPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLSTSSPFTLGKRVVRAEEGESGGGGGGGGLTVGHTMGTSLMGGGGSGGFWAVPARPDFGQVWSFAAGAPPEMVFAQQQQPATLFVRHQQQQQASAAAAAAMGEASAARVGN

Links
Other TCP family TFs
Other *Arabidopsis lyrata* TFs

644 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Afo_R005725	Aptenodytes forsteri	Afo_R005725	N	0.000
Brh_R013360	Buceros rhinoceros	Brh_R013360	N	0.000
Cmyd_10003651	Chelonia mydas	Cmyd_10003651	N	0.000
KCMF1	Anolis carolinensis	ENSACAG00000005906	N	0.000
ENSAMEG00000002032	Ailuropoda melanoleuca	ENSAMEG00000002032	N	0.000
ENSAMXG00000006684	Astyanax mexicanus	ENSAMXG00000006684	N	0.000
ENSAPLG00000013426	Anas platyrhynchos	ENSAPLG00000013426	N	0.000
KCMF1	Bos taurus	ENSBTAG00000020630	N	0.000
ENSBTAP00000052676-D1	Bos grunniens	ENSBTAP00000052676-D1	N	0.000
KCMF1	Canis familiaris	ENSCAFG00000007871	N	0.000
KCMF1	Choloepus hoffmanni	ENSCHOG00000005786	N	0.000
KCMF1	Cavia porcellus	ENSCPOG00000023050	N	0.000
kcmf1	Danio rerio	ENSDARG00000067656	N	0.000
KCMF1	Dasypus novemcinctus	ENSDNOG00000047192	N	0.000
ENSDORG00000002248	Dipodomys ordii	ENSDORG00000002248	N	0.000
KCMF1	Equus caballus	ENSECAG00000024834	N	0.000
ENSETEG00000001809	Echinops telfairi	ENSETEG00000001809	N	0.000
ENSFALG00000005137	Ficedula albicollis	ENSFALG00000005137	N	0.000
KCMF1	Felis catus	ENSFCAG00000026410	N	0.000
KCMF1	Homo sapiens	ENSG00000176407	N	0.000
kcmf1	Gasterosteus aculeatus	ENSGACG00000016222	N	0.000
ENSGALG00000014441	Gallus gallus	ENSGALG00000014441	N	0.000
KCMF1	Gorilla gorilla	ENSGGOG00000009501	N	0.000
ENSGMOG00000014478	Gadus morhua	ENSGMOG00000014478	N	0.000
KCMF1	Loxodonta africana	ENSLAFG00000018643	N	0.000
ENSLOCG00000011313	Lepisosteus oculatus	ENSLOCG00000011313	N	0.000
ENSMEUG00000003898	Macropus eugenii	ENSMEUG00000003898	N	0.000
KCMF1	Microcebus murinus	ENSMICG00000016473	N	0.000
KCMF1	Myotis lucifugus	ENSMLUG00000000979	N	0.000
KCMF1	Macaca mulatta	ENSMMUG00000001414	N	0.000
KCMF1	Monodelphis domestica	ENSMODG00000015567	N	0.000
ENSMPUG00000008632	Mustela putorius furo	ENSMPUG00000008632	N	0.000
Kcmf1	Mus musculus	ENSMUSG00000055239	N	0.000
ENSNLEG00000001418	Nomascus leucogenys	ENSNLEG00000001418	N	0.000
KCMF1	Ornithorhynchus anatinus	ENSOANG00000007129	N	0.000
ENSOARG00000020445	Ovis aries	ENSOARG00000020445	N	0.000
KCMF1	Oryctolagus cuniculus	ENSOCUG00000002533	N	0.000
KCMF1	Otolemur garnettii	ENSOGAG00000034863	N	0.000
KCMF1	Ochotona princeps	ENSOPRG00000009018	N	0.000
ENSPANG00000007610	Papio anubis	ENSPANG00000007610	N	0.000
KCMF1	Procavia capensis	ENSPCAG00000008538	N	0.000
ENSPPYG00000012235	Pongo abelii	ENSPPYG00000012235	N	0.000
ENSPSIG00000012230	Pelodiscus sinensis	ENSPSIG00000012230	N	0.000
KCMF1	Pan troglodytes	ENSPTRG00000012127	N	0.000
KCMF1	Pteropus vampyrus	ENSPVAG00000009122	N	0.000
Kcmf1	Rattus norvegicus	ENSRNOG00000015097	N	0.000
ENSSHAG00000009198	Sarcophilus harrisii	ENSSHAG00000009198	N	0.000
KCMF1	Sus scrofa	ENSSSCG00000008242	N	0.000
ENSSTOG00000021528	Ictidomys tridecemlineatus	ENSSTOG00000021528	N	0.000
KCMF1	Tupaia belangeri	ENSTBEG00000016438	N	0.000
KCMF1	Taeniopygia guttata	ENSTGUG00000000265	N	0.000
ENSTSYG00000009776	Tarsius syrichta	ENSTSYG00000009776	N	0.000
KCMF1	Tursiops truncatus	ENSTTRG00000001934	N	0.000
Gfo_R004112	Geospiza fortis	Gfo_R004112	N	0.000
Gfo_R013520	Geospiza fortis	Gfo_R013520	N	0.000
Pvit_16118	Pogona vitticeps	Pvit_16118	N	0.000
Tal_R012527	Tyto alba	Tal_R012527	N	0.000
kcmf1	Xenopus tropicalis	XB-GENE-1021676	N	0.000
kcmf1.L	Xenopus laevis	XB-GENE-1021681	N	0.000

scaffold_600839.1 (Arabidopsis lyrata) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

644 Related TFs

scaffold_600839.1 **(Arabidopsis lyrata)
TCP**