CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pm023748 *(Prunus mume)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Pm023748	T344563_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.973	0.795
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.966	0.771
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.964	0.783
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.964	0.783
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.964	0.795
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.964	0.663
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.964	0.663
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.964	0.663
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.964	0.663
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.963	0.687
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.962	0.783
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.962	0.783
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.962	0.783
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.961	0.711
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.954	0.783
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.951	0.687
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.951	0.687
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.951	0.687
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.951	0.687
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.950	0.687
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.948	0.675
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.948	0.687
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.947	0.687
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.943	0.663
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.939	0.675
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.934	0.663
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.934	0.663
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.926	0.639
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.922	0.639
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.921	0.627
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.913	0.590
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.913	0.590
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.912	0.578
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.875	0.566
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.875	0.566
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pm023748	TCP	90	189	ASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVSVDAVSQSSGLAPVGPAAPQGLVPVWAVGGAG

Links
Other TCP family TFs
Other *Prunus mume* TFs

656 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O1_08282	Capronia coronata	A1O1_08282	N	0.000
A1O3_03291	Capronia epimyces	A1O3_03291	I	0.000
A1O5_00025	Cladophialophora psammophila	A1O5_00025	N	0.000
A1O7_03671	Cladophialophora yegresii	A1O7_03671	N	0.000
A1O9_03542	Exophiala aquamarina	A1O9_03542	I	0.000
A1O9_13001	Exophiala aquamarina	A1O9_13001	I	0.000
AUEXF2481DRAFT_25614	Aureobasidium subglaciale	AUEXF2481DRAFT_25614	I	0.000
BBA_08191	Beauveria bassiana	BBA_08191	I	0.000
Bcin09g02560	Botrytis cinerea	Bcin09g02560	I	0.000
CCM_00913	Cordyceps militaris	CCM_00913	I	0.000
CFIO01_02322	Colletotrichum fioriniae	CFIO01_02322	I	0.000
CGGC5_10205	Colletotrichum gloeosporioides	CGGC5_10205	I	0.000
CH063_07213	Colletotrichum higginsianum	CH063_07213	I	0.000
CHGG_00505	Chaetomium globosum	CHGG_00505	I	0.000
CMQ_2744	Grosmannia clavigera	CMQ_2744	I	0.000
Cob_02185	Colletotrichum orbiculare	Cob_02185	I	0.000
CSUB01_08337	Colletotrichum sublineola	CSUB01_08337	I	0.000
CSUB01_09138	Colletotrichum sublineola	CSUB01_09138	I	0.000
CTHT_0050850	Chaetomium thermophilum	CTHT_0050850	I	0.000
estExt_fgenesh3_pm.C_140174	Neurospora discreta	estExt_fgenesh3_pm.C_140174	I	0.000
e_gw1.5.1042.1	Nectria haematococca	e_gw1.5.1042.1	I	0.000
F503_05733	Ophiostoma piceae uamh	F503_05733	I	0.000
FFUJ_07449	Fusarium fujikuroi	FFUJ_07449	I	0.000
FGRRES_17309	Fusarium graminearum	FGRRES_17309	I	0.000
FOXG_05408	Fusarium oxysporum	FOXG_05408	I	0.000
FOXG_14277	Fusarium oxysporum	FOXG_14277	I	0.000
FPSE_00499	Fusarium pseudograminearum	FPSE_00499	I	0.000
FVEG_02723	Fusarium verticillioides	FVEG_02723	I	0.000
G647_04707	Cladophialophora carrionii	G647_04707	N	0.000
GLRG_07449	Colletotrichum graminicola	GLRG_07449	I	0.000
HMPREF1120_05352	Exophiala dermatitidis	HMPREF1120_05352	N	0.000
HMPREF1624_07464	Sporothrix schenckii	HMPREF1624_07464	I	0.000
MBM_05016	Marssonina brunnea	MBM_05016	I	0.000
MGG_09263	Magnaporthe oryzae	MGG_09263	I	0.000
NCU04663	Neurospora crassa	NCU04663	D	0.000
NechaG40581	Fusarium solani	NechaG40581	I	0.000
OIDMADRAFT_112327	Oidiodendron maius	OIDMADRAFT_112327	I	0.000
PV04_03866	Capronia semiimmersa	PV04_03866	N	0.000
PV06_00266	Exophiala oligosperma	PV06_00266	N	0.000
PV07_06437	Cladophialophora immunda	PV07_06437	I	0.000
PV08_04106	Exophiala spinifera	PV08_04106	N	0.000
PV10_05308	Exophiala mesophila	PV10_05308	N	0.000
PV11_00815	Exophiala sideris	PV11_00815	N	0.000
SAPIO_CDS8637	Scedosporium apiospermum	SAPIO_CDS8637	I	0.000
SBOR_3621	Sclerotinia borealis	SBOR_3621	I	0.000
SMAC_08342	Sordaria macrospora	SMAC_08342	I	0.000
SPBR_06325	Sporothrix brasiliensis	SPBR_06325	I	0.000
SS1G_05371	Sclerotinia sclerotiorum	SS1G_05371	I	0.000
THITE_40970	Thielavia terrestris	THITE_40970	I	0.000
VDAG_00161	Verticillium dahliae	VDAG_00161	I	0.000
VDBG_00550	Verticillium alfalfae	VDBG_00550	I	0.000
VDBG_00550	Verticillium albo atrum	VDBG_00550	I	0.000
Z517_10110	Fonsecaea pedrosoi	Z517_10110	N	0.000
Z519_00024	Cladophialophora bantiana	Z519_00024	N	0.000

Pm023748 (Prunus mume) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

656 Related TFs

Pm023748 **(Prunus mume)
TCP**