CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.004G206900 *(Gossypium raimondii)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Gorai.004G206900	T344854_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.954	0.670
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.950	0.634
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.950	0.634
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.950	0.634
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.949	0.616
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.949	0.616
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.948	0.625
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.945	0.643
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.939	0.598
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.936	0.545
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.936	0.518
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.935	0.518
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.934	0.491
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.934	0.491
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.934	0.491
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.934	0.491
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.934	0.482
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.933	0.509
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.933	0.509
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.933	0.509
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.933	0.509
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.931	0.509
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.926	0.491
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.921	0.491
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.920	0.491
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.904	0.455
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.904	0.455
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.898	0.482
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.888	0.446
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.888	0.446
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.886	0.420
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.885	0.411
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.883	0.429
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.843	0.393
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.843	0.393
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.004G206900.1	TCP	66	197	SSTKDRHTKVEGRGRRIRIPATSAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTTAGSNASNNKNNNNQIDDDGGATKKTKRPAKSEFCDINDGNPFAISNQQQLVTQ

Links
Other TCP family TFs
Other *Gossypium raimondii* TFs

625 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACRE_009170	Acremonium chrysogenum	ACRE_009170	I	0.000
ARB_01185	Arthroderma benhamiae	ARB_01185	N	0.000
BAUCODRAFT_70890	Baudoinia compniacensis	BAUCODRAFT_70890	I	0.000
BBA_00740	Beauveria bassiana	BBA_00740	I	0.000
Bcin02g05460	Botrytis cinerea	Bcin02g05460	I	0.000
BDDG_03436	Blastomyces dermatitidis	BDDG_03436	N	0.000
ACLA_037430	Aspergillus clavatus	CADACLAG00003256	N	0.000
CADAFLAG00001296	Aspergillus flavus	CADAFLAG00001296	N	0.000
AFUA_3G09670	Aspergillus fumigatus	CADAFUAG00004963	N	0.000
CADANGAG00012801	Aspergillus niger	CADANGAG00012801	N	0.000
ANIA_03075	Aspergillus nidulans	CADANIAG00010003	N	0.000
CADAORAG00003168	Aspergillus oryzae	CADAORAG00003168	N	0.000
ATEG_04481	Aspergillus terreus	CADATEAG00009053	N	0.000
NFIA_067630	Neosartorya fischeri	CADNFIAG00006385	N	0.000
CCM_05966	Cordyceps militaris	CCM_05966	I	0.000
CFIO01_08325	Colletotrichum fioriniae	CFIO01_08325	I	0.000
CGGC5_10678	Colletotrichum gloeosporioides	CGGC5_10678	I	0.000
CH063_10224	Colletotrichum higginsianum	CH063_10224	I	0.000
CHGG_09596	Chaetomium globosum	CHGG_09596	I	0.000
CIMG_01913	Coccidioides immitis	CIMG_01913	N	0.000
CMQ_3768	Grosmannia clavigera	CMQ_3768	I	0.000
Cob_01903	Colletotrichum orbiculare	Cob_01903	I	0.000
CPC735_046040	Coccidioides posadasii	CPC735_046040	N	0.000
CSUB01_08919	Colletotrichum sublineola	CSUB01_08919	I	0.000
DOTSEDRAFT_54819	Dothistroma septosporum	DOTSEDRAFT_54819	I	0.000
estExt_fgenesh1_pg.C_chr_60424	Mycosphaerella graminicola	estExt_fgenesh1_pg.C_chr_60424	I	0.000
estExt_Genewise1Plus.C_13865	Mycosphaerella fijiensis	estExt_Genewise1Plus.C_13865	I	0.000
estExt_Genewise1Plus.C_90712	Neurospora discreta	estExt_Genewise1Plus.C_90712	I	0.000
e_gw1.8.145.1	Cryphonectria parasitica	e_gw1.8.145.1	I	0.000
F503_03706	Ophiostoma piceae uamh	F503_03706	I	0.000
FFUJ_08392	Fusarium fujikuroi	FFUJ_08392	I	0.000
fgenesh1_pm.00168_#_210	Aspergillus carbonarius	fgenesh1_pm.00168_#_210	N	0.000
fgenesh1_pm.sca_12_chr5_2_0000158	Nectria haematococca	fgenesh1_pm.sca_12_chr5_2_0000158	I	0.000
FGRRES_17514	Fusarium graminearum	FGRRES_17514	I	0.000
FPSE_08858	Fusarium pseudograminearum	FPSE_08858	I	0.000
GLRG_09279	Colletotrichum graminicola	GLRG_09279	I	0.000
GMDG_05510	Pseudogymnoascus destructans	GMDG_05510	I	0.000
GMDG_06850	Pseudogymnoascus destructans	GMDG_06850	I	0.000
GSTUM_00003233001	Tuber melanosporum	GSTUM_00003233001	N	0.000
GSTUM_00008124001	Tuber melanosporum	GSTUM_00008124001	N	0.000
H101_05235	Trichophyton interdigitale	H101_05235	N	0.000
H102_08372	Trichophyton rubrum	H102_08372	N	0.000
H105_08399	Trichophyton soudanense	H105_08399	N	0.000
HCBG_02521	Histoplasma capsulatum	HCBG_02521	N	0.000
HMPREF1624_04642	Sporothrix schenckii	HMPREF1624_04642	I	0.000
M7I_1858	Glarea lozoyensis	M7I_1858	I	0.000
MANI_011716	Metarhizium anisopliae	MANI_011716	I	0.000
MAPG_09501	Magnaporthe poae	MAPG_09501	I	0.000
MBM_07119	Marssonina brunnea	MBM_07119	N	0.000
MBR_04909	Metarhizium brunneum	MBR_04909	I	0.000
MCYG_03418	Arthroderma otae	MCYG_03418	N	0.000
MCYG_03418	Microsporum canis	MCYG_03418	N	0.000
MGU_01761	Metarhizium guizhouense	MGU_01761	I	0.000
MGYG_00581	Microsporum gypseum	MGYG_00581	N	0.000
MPH_00135	Macrophomina phaseolina	MPH_00135	N	0.000
MYCFIDRAFT_204155	Pseudocercospora fijiensis	MYCFIDRAFT_204155	I	0.000
Mycgr3G109947	Zymoseptoria tritici	Mycgr3G109947	I	0.000
MYCTH_2308823	Myceliophthora thermophila	MYCTH_2308823	I	0.000
NCU02307	Neurospora crassa	NCU02307	D	0.000
NechaG93341	Fusarium solani	NechaG93341	I	0.000
NEUTE1DRAFT_124026	Neurospora tetrasperma	NEUTE1DRAFT_124026	I	0.000
OCS_02179	Ophiocordyceps sinensis	OCS_02179	I	0.000
Pc12g15860	Penicillium chrysogenum	Pc12g15860	N	0.000
PCH_Pc12g15860	Penicillium rubens	PCH_Pc12g15860	N	0.000
PDE_04982	Penicillium oxalicum	PDE_04982	N	0.000
PDIP_76170	Penicillium digitatum	PDIP_76170	N	0.000
PEX1_096620	Penicillium expansum	PEX1_096620	N	0.000
PFICI_14476	Pestalotiopsis fici	PFICI_14476	I	0.000
PITC_015280	Penicillium italicum	PITC_015280	N	0.000
PMAA_045840	Penicillium marneffei	PMAA_045840	N	0.000
PMAA_045840	Talaromyces marneffei	PMAA_045840	N	0.000
PODANS_5_9700	Podospora anserina	PODANS_5_9700	I	0.000
PV04_04067	Capronia semiimmersa	PV04_04067	N	0.000
PVAR5_5474	Byssochlamys spectabilis	PVAR5_5474	N	0.000
S40285_04496	Stachybotrys chlorohalonata	S40285_04496	I	0.000
S40288_04125	Stachybotrys chartarum	S40288_04125	I	0.000
SAPIO_CDS3835	Scedosporium apiospermum	SAPIO_CDS3835	I	0.000
SBOR_8128	Sclerotinia borealis	SBOR_8128	I	0.000
SMAC_09353	Sordaria macrospora	SMAC_09353	I	0.000
TEQG_00925	Trichophyton equinum	TEQG_00925	N	0.000
TESG_06256	Trichophyton tonsurans	TESG_06256	N	0.000
THITE_2050890	Thielavia terrestris	THITE_2050890	I	0.000
TRIATDRAFT_37495	Trichoderma atroviride	TRIATDRAFT_37495	I	0.000
TRIREDRAFT_51907	Trichoderma reesei	TRIREDRAFT_51907	I	0.000
TRIVIDRAFT_114564	Trichoderma virens	TRIVIDRAFT_114564	I	0.000
TRV_03240	Trichophyton verrucosum	TRV_03240	N	0.000
TSTA_035080	Talaromyces stipitatus	TSTA_035080	N	0.000
U727_00431251121	Penicillium solitum	U727_00431251121	N	0.000
UCRNP2_2614	Neofusicoccum parvum	UCRNP2_2614	N	0.000
UCRPA7_5598	Togninia minima	UCRPA7_5598	I	0.000
UREG_06856	Uncinocarpus reesii	UREG_06856	N	0.000
UV8b_6210	Ustilaginoidea virens	UV8b_6210	I	0.000
VDAG_09925	Verticillium dahliae	VDAG_09925	I	0.000
VHEMI08584	Torrubiella hemipterigena	VHEMI08584	I	0.000
W97_03128	Coniosporium apollinis	W97_03128	N	0.000
X797_001395	Metarhizium robertsii	X797_001395	I	0.000

Gorai.004G206900 (Gossypium raimondii) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

625 Related TFs

Gorai.004G206900 **(Gossypium raimondii)
TCP**