Gorai.009G398700 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.009G398700 T344874_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.829 0.554
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.829 0.554
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.829 0.554
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.829 0.554
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G398700.1 TCP 44 99
Gorai.009G398700.2 TCP 44 99
Gorai.009G398700.3 TCP 44 99
Gorai.009G398700.4 TCP 44 99
Gorai.009G398700.5 TCP 44 99

Links

Other TCP family TFs
Other Gossypium raimondii TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29638.m000529 Ricinus communis 29638.m000529 I 0.835
AC213524.3_FG003 Zea mays AC213524.3_FG003 I 0.863
Aquca_021_00091 Aquilegia coerulea Aquca_021_00091 I 0.840
TCP20 Arabidopsis thaliana AT3G27010 D 0.829
Bra016090 Brassica rapa Bra016090 I 0.822
BRADI3G60350 Brachypodium distachyon BRADI3G60350 I 0.885
BRADI5G02880 Brachypodium distachyon BRADI5G02880 I 0.850
chr3.LjT14G01.70.nd Lotus japonicus chr3.LjT14G01.70.nd I 0.825
Cla018905 Citrullus lanatus Cla018905 I 0.827
Eucgr.A01143 Eucalyptus grandis Eucgr.A01143 I 0.845
Eucgr.B03529 Eucalyptus grandis Eucgr.B03529 I 0.849
evm.TU.supercontig_65.17 Carica papaya evm.TU.supercontig_65.17 I 0.892
fgenesh2_kg.1__3639__AT1G35560.1 Arabidopsis lyrata fgenesh2_kg.1__3639__AT1G35560.1 I 0.845
Gorai.006G043800 Gossypium raimondii Gorai.006G043800 I 0.824
GRMZM2G096610 Zea mays GRMZM2G096610 I 0.829
GSMUA_Achr4G00500_001 Musa acuminata GSMUA_Achr4G00500_001 I 0.830
GSMUA_Achr5G25030_001 Musa acuminata GSMUA_Achr5G25030_001 I 0.823
GSMUA_Achr6G02720_001 Musa acuminata GSMUA_Achr6G02720_001 I 0.822
GSMUA_Achr7G02680_001 Musa acuminata GSMUA_Achr7G02680_001 I 0.831
GSMUA_Achr7G23010_001 Musa acuminata GSMUA_Achr7G23010_001 I 0.826
LjSGA_018381.1 Lotus japonicus LjSGA_018381.1 I 0.825
LjSGA_018700.2 Lotus japonicus LjSGA_018700.2 I 0.823
LPERR04G02520 Leersia perrieri LPERR04G02520 I 0.859
Lus10037046.g Linum usitatissimum Lus10037046.g I 0.855
mgf024922m Mimulus guttatus mgf024922m I 0.822
MLOC_35578 Hordeum vulgare MLOC_35578 I 0.907
OB01G51240 Oryza brachyantha OB01G51240 I 0.907
OB04G26360 Oryza brachyantha OB04G26360 I 0.843
OB11G13800 Oryza brachyantha OB11G13800 I 0.847
OBART04G03730 Oryza barthii OBART04G03730 I 0.829
OGLUM02G26080 Oryza glumaepatula OGLUM02G26080 I 0.912
OGLUM04G03150 Oryza glumaepatula OGLUM04G03150 I 0.829
OMERI02G02280 Oryza meridionalis OMERI02G02280 I 0.836
ONIVA04G02900 Oryza nivara ONIVA04G02900 I 0.829
OPUNC03G20560 Oryza punctata OPUNC03G20560 I 0.844
ORGLA01G0346000 Oryza glaberrima ORGLA01G0346000 I 0.823
ORGLA04G0027800 Oryza glaberrima ORGLA04G0027800 I 0.829
ORUFI04G04370 Oryza rufipogon ORUFI04G04370 I 0.829
OS02G0641100 Oryza sativa OS02G0641100 I 0.912
OS04G0194600 Oryza sativa OS04G0194600 I 0.829
Pavir.Ga02405 Panicum virgatum Pavir.Ga02405 I 0.829
Pavir.J20370 Panicum virgatum Pavir.J20370 I 0.835
Pavir.J36496 Panicum virgatum Pavir.J36496 I 0.869
PK09668.1 Cannabis sativa PK09668.1 I 0.896
Pm028040 Prunus mume Pm028040 N 0.893
POPTR_0001s13500 Populus trichocarpa POPTR_0001s13500 I 0.833
POPTR_0003s16630 Populus trichocarpa POPTR_0003s16630 I 0.837
POPTR_0009s01480 Populus trichocarpa POPTR_0009s01480 I 0.847
PRUPE_ppa025069mg Prunus persica PRUPE_ppa025069mg N 0.841
Sb03g044320 Sorghum bicolor Sb03g044320 I 0.832
Sb08g021725 Sorghum bicolor Sb08g021725 I 0.830
Solyc02g094290.1 Solanum lycopersicum Solyc02g094290.1 I 0.843
Solyc11g020670.1 Solanum lycopersicum Solyc11g020670.1 I 0.828
TCM_022798 Theobroma cacao TCM_022798 I 0.965
VIT_18s0117g00340 Vitis vinifera VIT_18s0117g00340 I 0.830