Lus10041328.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10041328.g T344907_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.883 0.430
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.874 0.453
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.874 0.453
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.874 0.453
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.874 0.453
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.867 0.453
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.855 0.500
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.850 0.430
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.848 0.419
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.848 0.419
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.843 0.395
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.839 0.419
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.839 0.419
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.837 0.488
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.833 0.488
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.831 0.488
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.831 0.477
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.827 0.419
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041328 TCP 39 150

Links

Other TCP family TFs
Other Linum usitatissimum TFs

398 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATNIG1 Arabidopsis lyrata Al_scaffold_0008_132 I 0.000
BHLH28 Arabidopsis thaliana AT5G46830 D 0.000
Bostr.28243s0053 Boechera stricta Bostr.28243s0053 I 0.000
Eucgr.B00713 Eucalyptus grandis Eucgr.B00713 I 0.000
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I 0.000
MDP0000135282 Malus domestica MDP0000135282 N 0.000
MDP0000137325 Malus domestica MDP0000137325 I 0.000
MDP0000140864 Malus domestica MDP0000140864 N 0.000
MDP0000183948 Malus domestica MDP0000183948 I 0.000
MDP0000442310 Malus domestica MDP0000442310 I 0.000
MDP0000710285 Malus domestica MDP0000710285 I 0.000
MDP0000788304 Malus domestica MDP0000788304 N 0.000
MDP0000907218 Malus domestica MDP0000907218 N 0.000
MTR_8g024770 Medicago truncatula MTR_8g024770 I 0.000
MTR_8g024790 Medicago truncatula MTR_8g024790 I 0.000
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I 0.000
Pm023735 Prunus mume Pm023735 I 0.000
Pm023738 Prunus mume Pm023738 I 0.000
Pm028604 Prunus mume Pm028604 I 0.000
Pm028605 Prunus mume Pm028605 I 0.000
Pm028606 Prunus mume Pm028606 I 0.000
Pm028607 Prunus mume Pm028607 I 0.000
Pm029399 Prunus mume Pm029399 I 0.000
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I 0.000
PRUPE_ppa016220mg Prunus persica PRUPE_ppa016220mg I 0.000
PRUPE_ppa022165mg Prunus persica PRUPE_ppa022165mg I 0.000
PRUPE_ppa022201mg Prunus persica PRUPE_ppa022201mg I 0.000
PRUPE_ppa025417mg Prunus persica PRUPE_ppa025417mg I 0.000
PRUPE_ppa027182mg Prunus persica PRUPE_ppa027182mg I 0.000
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I 0.000