Pavir.J03212 (Panicum virgatum)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Pavir.J03212 T351737_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtGRF6
M02545_2.00 		Arabidopsis thaliana
NNNNYDNN
NNHRNNNN		 PBM
Weirauch et al.(2014)
pTH7356 		0.814 0.814
AtGRF6
M07369_2.00 		Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN		 Dap-seq
OMalley et al.(2016)
AtGRF6_col_a 		0.814 0.814
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03212.1.p WRC 90 132

Links

Other WRC family TFs
Other Panicum virgatum TFs

508 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m008552 Ricinus communis 30128.m008552 I
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I
ASR3 Arabidopsis thaliana AT2G33550 D
Bo4g043600 Brassica oleracea Bo4g043600 I
Bo4g182020 Brassica oleracea Bo4g182020 I
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I
Bra005486 Brassica rapa Bra005486 I
Bra021860 Brassica rapa Bra021860 I
Carubv10023675m.g Capsella rubella Carubv10023675m.g I
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I
cassava40545.m1 Manihot esculenta cassava40545.m1 I
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I
Cla001502 Citrullus lanatus Cla001502 I
Cucsa.349220 Cucumis sativus Cucsa.349220 I
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I
GLYMA08G28880 Glycine max GLYMA08G28880 I
GLYMA18G51790 Glycine max GLYMA18G51790 I
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I
MDP0000232058 Malus domestica MDP0000232058 I
mgf009760m Mimulus guttatus mgf009760m I
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I
PK25885.1 Cannabis sativa PK25885.1 I
Pm024597 Prunus mume Pm024597 I
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I
Si017674m.g Setaria italica Si017674m.g I
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I