Pavir.Ba00227 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Ba00227 T356680_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY46
M07395_2.00 		Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB		 Dap-seq
OMalley et al.(2016)
WRKY46_col_a 		0.817 0.610
WRKY46
M07396_2.00 		Arabidopsis thaliana
HRAAGTCAACG
CGTTGACTTYD		 Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a 		0.817 0.610
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00227.1.p WRKY 131 192

Links

Other WRKY family TFs
Other Panicum virgatum TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC165171.2_FG002 Zea mays AC165171.2_FG002 I 0.811
AC205562.3_FG002 Zea mays AC205562.3_FG002 I 0.811
Al_scaffold_0008_672 Arabidopsis lyrata Al_scaffold_0008_672 I 0.810
AMTR_s00003p00229970 Amborella trichopoda AMTR_s00003p00229970 I 0.808
WRKY46 Arabidopsis thaliana AT2G46400 D 0.817
BGIOSGA012571 Oryza indica BGIOSGA012571 I 0.824
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.809
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.815
BGIOSGA019621 Oryza indica BGIOSGA019621 I 0.811
BGIOSGA023706 Oryza indica BGIOSGA023706 I 0.889
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.816
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.831
BGIOSGA036756 Oryza indica BGIOSGA036756 N 0.830
BGIOSGA040489 Oryza indica BGIOSGA040489 I 0.811
Bo3g035140 Brassica oleracea Bo3g035140 I 0.815
Bo4g009270 Brassica oleracea Bo4g009270 I 0.808
Bo4g101290 Brassica oleracea Bo4g101290 I 0.815
Bo4g190390 Brassica oleracea Bo4g190390 I 0.814
Bostr.13158s0168 Boechera stricta Bostr.13158s0168 I 0.814
Bostr.25993s0129 Boechera stricta Bostr.25993s0129 I 0.814
Bostr.3148s0146 Boechera stricta Bostr.3148s0146 I 0.810
Bra000203 Brassica rapa Bra000203 I 0.815
Bra004540 Brassica rapa Bra004540 I 0.808
Bra004586 Brassica rapa Bra004586 I 0.817
Bra014426 Brassica rapa Bra014426 I 0.814
Bra016974 Brassica rapa Bra016974 I 0.814
BRADI1G17660 Brachypodium distachyon BRADI1G17660 I 0.840
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.831
BRADI2G44270 Brachypodium distachyon BRADI2G44270 I 0.815
BRADI3G34850 Brachypodium distachyon BRADI3G34850 I 0.813
BRADI4G28280 Brachypodium distachyon BRADI4G28280 I 0.812
BRADI4G44342 Brachypodium distachyon BRADI4G44342 N 0.809
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.809
Cagra.0050s0059 Capsella grandiflora Cagra.0050s0059 I 0.816
Cagra.0483s0080 Capsella grandiflora Cagra.0483s0080 I 0.820
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I 0.812
Cagra.9063s0001 Capsella grandiflora Cagra.9063s0001 I 0.810
Carubv10019489m.g Capsella rubella Carubv10019489m.g I 0.814
Carubv10023578m.g Capsella rubella Carubv10023578m.g I 0.816
Carubv10024972m.g Capsella rubella Carubv10024972m.g I 0.812
Carubv10026841m.g Capsella rubella Carubv10026841m.g I 0.810
chr1.CM0147.890.nc Lotus japonicus chr1.CM0147.890.nc I 0.811
chr2.CM0641.50.nc Lotus japonicus chr2.CM0641.50.nc I 0.821
Ciclev10013616m.g Citrus clementina Ciclev10013616m.g I 0.811
Cla018477 Citrullus lanatus Cla018477 I 0.811
Cucsa.042350 Cucumis sativus Cucsa.042350 I 0.811
Cucsa.066300 Cucumis sativus Cucsa.066300 I 0.811
F775_02479 Aegilops tauschii F775_02479 N 0.811
F775_07376 Aegilops tauschii F775_07376 I 0.823
F775_15928 Aegilops tauschii F775_15928 I 0.859
F775_21933 Aegilops tauschii F775_21933 I 0.865
F775_25840 Aegilops tauschii F775_25840 I 0.815
fgenesh1_pm.C_scaffold_5002145 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5002145 I 0.814
WRKY46 Arabidopsis lyrata fgenesh2_kg.4__2854__AT2G46400.1 I 0.811
fgenesh2_kg.97__1__AT5G43290.1 Arabidopsis lyrata fgenesh2_kg.97__1__AT5G43290.1 I 0.810
gene18438-v1.0-hybrid Fragaria vesca gene18438-v1.0-hybrid I 0.811
GLYMA07G16040 Glycine max GLYMA07G16040 I 0.811
GLYMA18G39970 Glycine max GLYMA18G39970 I 0.811
GRMZM2G059562 Zea mays GRMZM2G059562 I 0.811
GRMZM2G169564 Zea mays GRMZM2G169564 N 0.820
GRMZM2G324999 Zea mays GRMZM2G324999 I 0.809
GRMZM2G381378 Zea mays GRMZM2G381378 I 0.857
GSMUA_Achr10G00810_001 Musa acuminata GSMUA_Achr10G00810_001 I 0.812
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I 0.821
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I 0.816
GSMUA_Achr7G15060_001 Musa acuminata GSMUA_Achr7G15060_001 I 0.812
GSMUA_Achr8G02180_001 Musa acuminata GSMUA_Achr8G02180_001 I 0.811
GSMUA_AchrUn_randomG18710_001 Musa acuminata GSMUA_AchrUn_randomG18710_001 I 0.812
LPERR03G14340 Leersia perrieri LPERR03G14340 I 0.809
LPERR05G16150 Leersia perrieri LPERR05G16150 I 0.811
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.824
LPERR07G23280 Leersia perrieri LPERR07G23280 I 0.894
LPERR11G00970 Leersia perrieri LPERR11G00970 N 0.826
LPERR12G01080 Leersia perrieri LPERR12G01080 N 0.826
MDP0000205962 Malus domestica MDP0000205962 I 0.810
MDP0000255768 Malus domestica MDP0000255768 I 0.810
MDP0000455180 Malus domestica MDP0000455180 I 0.809
MDP0000727570 Malus domestica MDP0000727570 I 0.809
MDP0000754989 Malus domestica MDP0000754989 I 0.809
MLOC_71897 Hordeum vulgare MLOC_71897 I 0.815
MLOC_74606 Hordeum vulgare MLOC_74606 I 0.847
MLOC_74884 Hordeum vulgare MLOC_74884 I 0.819
MLOC_74974 Hordeum vulgare MLOC_74974 I 0.808
MLOC_78461 Hordeum vulgare MLOC_78461 I 0.850
MTR_5g067700 Medicago truncatula MTR_5g067700 I 0.810
MTR_7g062220 Medicago truncatula MTR_7g062220 I 0.810
OB03G26140 Oryza brachyantha OB03G26140 I 0.838
OB05G27830 Oryza brachyantha OB05G27830 I 0.811
OB05G27850 Oryza brachyantha OB05G27850 I 0.810
OB07G31890 Oryza brachyantha OB07G31890 I 0.893
OB11G10760 Oryza brachyantha OB11G10760 N 0.830
OB12G11030 Oryza brachyantha OB12G11030 N 0.830
OBART03G16400 Oryza barthii OBART03G16400 I 0.824
OBART05G08130 Oryza barthii OBART05G08130 I 0.809
OBART05G11710 Oryza barthii OBART05G11710 I 0.811
OBART05G20330 Oryza barthii OBART05G20330 I 0.811
OBART05G20340 Oryza barthii OBART05G20340 I 0.818
OBART07G26430 Oryza barthii OBART07G26430 I 0.889
OBART11G01110 Oryza barthii OBART11G01110 I 0.831
OBART12G00850 Oryza barthii OBART12G00850 N 0.830
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I 0.824
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.809
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I 0.811
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.816
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.809
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.810
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.818
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I 0.811
OGLUM07G26470 Oryza glumaepatula OGLUM07G26470 I 0.889
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.831
OLONG_008209 Oryza longistaminata OLONG_008209 I 0.889
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.809
OLONG_024544 Oryza longistaminata OLONG_024544 I 0.824
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.808
OMERI03G14670 Oryza meridionalis OMERI03G14670 I 0.824
OMERI05G10380 Oryza meridionalis OMERI05G10380 I 0.811
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.816
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.815
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.818
OMERI07G23060 Oryza meridionalis OMERI07G23060 I 0.889
OMERI08G11390 Oryza meridionalis OMERI08G11390 I 0.811
OMERI11G01570 Oryza meridionalis OMERI11G01570 N 0.830
ONIVA03G17390 Oryza nivara ONIVA03G17390 I 0.824
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.809
ONIVA05G12100 Oryza nivara ONIVA05G12100 I 0.811
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.816
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.815
ONIVA07G26140 Oryza nivara ONIVA07G26140 I 0.889
ONIVA08G13920 Oryza nivara ONIVA08G13920 I 0.811
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.831
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.809
OPUNC05G10020 Oryza punctata OPUNC05G10020 I 0.811
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.816
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.810
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.814
OPUNC07G24890 Oryza punctata OPUNC07G24890 I 0.893
OPUNC11G00980 Oryza punctata OPUNC11G00980 N 0.826
OPUNC12G00990 Oryza punctata OPUNC12G00990 N 0.826
orange1.1g008458m.g Citrus sinensis orange1.1g008458m.g I 0.811
orange1.1g038951m.g Citrus sinensis orange1.1g038951m.g I 0.809
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.809
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I 0.811
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.816
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.811
ORGLA07G0207800 Oryza glaberrima ORGLA07G0207800 I 0.889
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I 0.811
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.831
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N 0.830
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I 0.824
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.809
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I 0.811
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.816
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.815
ORUFI07G27440 Oryza rufipogon ORUFI07G27440 I 0.889
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I 0.811
OS03G0335200 Oryza sativa OS03G0335200 I 0.824
OS05G0322900 Oryza sativa OS05G0322900 I 0.811
OS05G0478400 Oryza sativa OS05G0478400 I 0.816
OS05G0478800 Oryza sativa OS05G0478800 I 0.815
OS07G0680400 Oryza sativa OS07G0680400 I 0.883
OS08G0386200 Oryza sativa OS08G0386200 I 0.811
OS11G0117500 Oryza sativa OS11G0117500 N 0.830
OS12G0116700 Oryza sativa OS12G0116700 N 0.830
Pavir.Bb03750 Panicum virgatum Pavir.Bb03750 N 0.859
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.834
Pavir.Ea03258 Panicum virgatum Pavir.Ea03258 I 0.812
Pavir.Eb03563 Panicum virgatum Pavir.Eb03563 I 0.811
Pavir.Fa01520 Panicum virgatum Pavir.Fa01520 I 0.811
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.831
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.843
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.844
Pavir.J34713 Panicum virgatum Pavir.J34713 N 0.831
Pavir.J37854 Panicum virgatum Pavir.J37854 I 0.809
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.831
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.808
PDK_20s1440981g001 Phoenix dactylifera PDK_20s1440981g001 I 0.814
PDK_20s1521921g002 Phoenix dactylifera PDK_20s1521921g002 I 0.811
PGSC0003DMG400000211 Solanum tuberosum PGSC0003DMG400000211 I 0.809
PK10616.1 Cannabis sativa PK10616.1 I 0.814
Pm002679 Prunus mume Pm002679 I 0.811
PRUPE_ppa019550mg Prunus persica PRUPE_ppa019550mg I 0.811
Sb01g036180 Sorghum bicolor Sb01g036180 I 0.836
Sb02g043030 Sorghum bicolor Sb02g043030 I 0.863
Sb07g019400 Sorghum bicolor Sb07g019400 I 0.811
Sb08g002560 Sorghum bicolor Sb08g002560 N 0.831
scaffold_800733.1 Arabidopsis lyrata scaffold_800733.1 I 0.810
scaffold_800734.1 Arabidopsis lyrata scaffold_800734.1 I 0.812
scaffold_9700001.1 Arabidopsis lyrata scaffold_9700001.1 I 0.810
SELMODRAFT_29702 Selaginella moellendorffii SELMODRAFT_29702 I 0.817
SELMODRAFT_29703 Selaginella moellendorffii SELMODRAFT_29703 I 0.817
Si002401m.g Setaria italica Si002401m.g I 0.814
Si010764m.g Setaria italica Si010764m.g N 0.827
Si015433m.g Setaria italica Si015433m.g I 0.809
Si019098m.g Setaria italica Si019098m.g N 0.830
Si030395m.g Setaria italica Si030395m.g I 0.886
Si030528m.g Setaria italica Si030528m.g I 0.813
Si036565m.g Setaria italica Si036565m.g I 0.830
Solyc01g095630.2 Solanum lycopersicum Solyc01g095630.2 I 0.809
Solyc10g009550.2 Solanum lycopersicum Solyc10g009550.2 I 0.809
TCM_011624 Theobroma cacao TCM_011624 I 0.810
TCM_021911 Theobroma cacao TCM_021911 I 0.811
Thhalv10003250m.g Eutrema salsugineum Thhalv10003250m.g I 0.809
Thhalv10016713m.g Eutrema salsugineum Thhalv10016713m.g I 0.809
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I 0.817
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I 0.817
Traes_4AS_0DA136E0E Triticum aestivum Traes_4AS_0DA136E0E I 0.823
TRIUR3_06813 Triticum urartu TRIUR3_06813 I 0.859
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.811
WRKY49 Vitis vinifera VIT_08s0007g00570 I 0.811