CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J12092
(
Panicum virgatum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pavir.J12092
T356827_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM
KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.809
0.467
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J12092.1.p
WRKY
115
184
LDGYQWRKYGQKQIEGAMYARSYYRCTWSAEQGCPAKRTVQRNDDGDDIHGGGGAPAEYTVVYMGEHTCT
Pavir.J12092.2.p
WRKY
115
180
LDGYQWRKYGQKQIEGAMYARCTWSAEQGCPAKRTVQRNDDGDDIHGGGGAPAEYTVVYMGEHTCT
Pavir.J12092.3.p
WRKY
114
183
LDGYQWRKYGQKQIEGAMYARSYYRCTWSAEQGCPAKRTVQRNDDGDDIHGGGGAPAEYTVVYMGEHTCT
Links
Other
WRKY
family TFs
Other
Panicum virgatum
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WRKY62
Arabidopsis lyrata
Al_scaffold_0006_13
I
0.809
WRKY62
Arabidopsis thaliana
AT5G01900
D
0.809
BGIOSGA000583
Oryza indica
BGIOSGA000583
N
0.811
BGIOSGA034611
Oryza indica
BGIOSGA034611
I
0.852
BGIOSGA036755
Oryza indica
BGIOSGA036755
I
0.852
BRADI4G44342
Brachypodium distachyon
BRADI4G44342
N
0.827
chr4.CM0025.230.nd
Lotus japonicus
chr4.CM0025.230.nd
I
0.808
Cla011097
Citrullus lanatus
Cla011097
I
0.808
Cucsa.107310
Cucumis sativus
Cucsa.107310
I
0.809
F775_23346
Aegilops tauschii
F775_23346
N
0.833
GLYMA04G41701
Glycine max
GLYMA04G41701
I
0.809
GLYMA05G36970
Glycine max
GLYMA05G36970
I
0.811
GLYMA06G13090
Glycine max
GLYMA06G13090
I
0.809
GLYMA08G02580
Glycine max
GLYMA08G02580
I
0.814
Gorai.004G134600
Gossypium raimondii
Gorai.004G134600
I
0.810
GRMZM2G005207
Zea mays
GRMZM2G005207
I
0.870
GRMZM2G029292
Zea mays
GRMZM2G029292
I
0.818
GRMZM2G139815
Zea mays
GRMZM2G139815
I
0.810
GSMUA_Achr8G25110_001
Musa acuminata
GSMUA_Achr8G25110_001
I
0.813
LPERR01G30500
Leersia perrieri
LPERR01G30500
I
0.809
LPERR07G11260
Leersia perrieri
LPERR07G11260
I
0.822
LPERR12G01100
Leersia perrieri
LPERR12G01100
I
0.850
Lus10001902.g
Linum usitatissimum
Lus10001902.g
I
0.811
MLOC_68369
Hordeum vulgare
MLOC_68369
N
0.838
OB01G44170
Oryza brachyantha
OB01G44170
I
0.814
OB11G27340
Oryza brachyantha
OB11G27340
I
0.815
OB12G11040
Oryza brachyantha
OB12G11040
I
0.850
OBART05G20330
Oryza barthii
OBART05G20330
I
0.808
OBART11G01120
Oryza barthii
OBART11G01120
I
0.852
OBART12G00860
Oryza barthii
OBART12G00860
I
0.852
OGLUM01G39380
Oryza glumaepatula
OGLUM01G39380
N
0.811
OGLUM11G00880
Oryza glumaepatula
OGLUM11G00880
I
0.852
OMERI01G32500
Oryza meridionalis
OMERI01G32500
N
0.809
OMERI11G01540
Oryza meridionalis
OMERI11G01540
I
0.849
OMERI11G01580
Oryza meridionalis
OMERI11G01580
I
0.849
ONIVA01G40380
Oryza nivara
ONIVA01G40380
N
0.811
ONIVA11G01190
Oryza nivara
ONIVA11G01190
I
0.852
OPUNC01G34290
Oryza punctata
OPUNC01G34290
N
0.811
OPUNC11G00990
Oryza punctata
OPUNC11G00990
N
0.843
OPUNC12G01000
Oryza punctata
OPUNC12G01000
N
0.843
ORGLA01G0292000
Oryza glaberrima
ORGLA01G0292000
N
0.811
ORGLA05G0177400
Oryza glaberrima
ORGLA05G0177400
I
0.808
ORGLA11G0202100
Oryza glaberrima
ORGLA11G0202100
I
0.852
ORGLA12G0007700
Oryza glaberrima
ORGLA12G0007700
I
0.852
ORUFI01G38680
Oryza rufipogon
ORUFI01G38680
N
0.811
Pavir.Ca00085
Panicum virgatum
Pavir.Ca00085
N
0.871
Pavir.Da02163
Panicum virgatum
Pavir.Da02163
I
0.808
Pavir.Db02095
Panicum virgatum
Pavir.Db02095
I
0.809
Pavir.Ib01568
Panicum virgatum
Pavir.Ib01568
I
0.817
Pavir.J05812
Panicum virgatum
Pavir.J05812
I
0.817
Pavir.J20374
Panicum virgatum
Pavir.J20374
N
0.880
PDK_20s1314561g002
Phoenix dactylifera
PDK_20s1314561g002
I
0.813
PGSC0003DMG400012160
Solanum tuberosum
PGSC0003DMG400012160
I
0.812
Pm018401
Prunus mume
Pm018401
I
0.808
PRUPE_ppa007708mg
Prunus persica
PRUPE_ppa007708mg
I
0.808
Sb08g002520
Sorghum bicolor
Sb08g002520
I
0.865
Si010813m.g
Setaria italica
Si010813m.g
N
0.872
Si028202m.g
Setaria italica
Si028202m.g
I
0.813
Solyc08g082110.2
Solanum lycopersicum
Solyc08g082110.2
I
0.810
TCM_016426
Theobroma cacao
TCM_016426
I
0.809
Traes_5BL_175E7FC38
Triticum aestivum
Traes_5BL_175E7FC38
N
0.833
Traes_5DL_09F1F8F79
Triticum aestivum
Traes_5DL_09F1F8F79
N
0.833
TRIUR3_24639
Triticum urartu
TRIUR3_24639
N
0.833
VIT_02s0025g01280
Vitis vinifera
VIT_02s0025g01280
I
0.814