VDBG_01960 (Verticillium alfalfae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 VDBG_01960 T387466_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HCBG_05620
M02579_2.00 		Histoplasma capsulatum
NNNCGGNHNN
NNDNCCGNNN		 PBM
Weirauch et al.(2014)
pTH8594 		0.569 0.675
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEY15851 Zinc cluster 189 232

Links

Other Zinc cluster family TFs
Other Verticillium alfalfae TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0 N
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0 N
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0 N
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1 N
genemark-nMf.1.1.scaf00124-processed-gene-0.5 Meloidogyne floridensis genemark-nMf.1.1.scaf00124-processed-gene-0.5 N
maker-nMf.1.1.scaf03855-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf03855-augustus-gene-0.7 N
maker-nMf.1.1.scaf08489-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf08489-snap-gene-0.4 N
maker-nMf.1.1.scaf08516-augustus-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf08516-augustus-gene-0.5 N
maker-nMf.1.1.scaf11243-snap-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf11243-snap-gene-0.6 N
MhA1_Contig311.frz3.gene3 Meloidogyne hapla MhA1_Contig311.frz3.gene3 N
Minc02822 Meloidogyne incognita Minc02822 N
Minc03112 Meloidogyne incognita Minc03112 N
Minc03113 Meloidogyne incognita Minc03113 N
Minc03116 Meloidogyne incognita Minc03116 N
Minc03122 Meloidogyne incognita Minc03122 N
Minc03124 Meloidogyne incognita Minc03124 N
Minc03125 Meloidogyne incognita Minc03125 N
Minc03951 Meloidogyne incognita Minc03951 N
Minc04628 Meloidogyne incognita Minc04628 N
Minc04734 Meloidogyne incognita Minc04734 N
Minc04767 Meloidogyne incognita Minc04767 N
Minc05938 Meloidogyne incognita Minc05938 N
Minc05939 Meloidogyne incognita Minc05939 N
Minc05944 Meloidogyne incognita Minc05944 N
Minc05946 Meloidogyne incognita Minc05946 N
Minc05948 Meloidogyne incognita Minc05948 N
Minc05953 Meloidogyne incognita Minc05953 N
Minc05954 Meloidogyne incognita Minc05954 N
Minc05955 Meloidogyne incognita Minc05955 N
Minc06648 Meloidogyne incognita Minc06648 N
Minc06656 Meloidogyne incognita Minc06656 N
Minc11357 Meloidogyne incognita Minc11357 N
Minc11359 Meloidogyne incognita Minc11359 N
Minc11362 Meloidogyne incognita Minc11362 N
Minc17472 Meloidogyne incognita Minc17472 N
Minc18240 Meloidogyne incognita Minc18240 N
snap_masked-nMf.1.1.scaf05597-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf05597-processed-gene-0.2 N