CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

AMTR_s00148p00084540 *(Amborella trichopoda)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	AMTR_s00148p00084540	T000396_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.780	0.750
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.775	0.788
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.763	0.750
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.762	0.750
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.761	0.788
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.761	0.788
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.761	0.712
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.761	0.712
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.761	0.712
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.746	0.712
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.746	0.712
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.746	0.712
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.741	0.692
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.741	0.692
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.738	0.712
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.735	0.731
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.729	0.750
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.729	0.750
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.728	0.654
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.720	0.750
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.720	0.750
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.720	0.750
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.717	0.712
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.717	0.712
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.717	0.712
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.716	0.654
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.714	0.615
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.713	0.673
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.713	0.673
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.712	0.712
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.698	0.731
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.698	0.731
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.698	0.731
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.698	0.731
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.698	0.731
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.696	0.596
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.695	0.731
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.695	0.577
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.693	0.692
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.693	0.692
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.691	0.615
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.689	0.692
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.689	0.692
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.688	0.692
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.688	0.654
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.688	0.654
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.686	0.712
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.686	0.654
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.686	0.654
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.683	0.654
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.681	0.712
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.681	0.712
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.681	0.712
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.680	0.654
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.678	0.673
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.678	0.673
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.677	0.750
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ERN08399	AP2	285	337	RHYRGVRERPWGKFAAEIRDSARHGARIWLGTFNTAEEAALAYDQAAYKMRGS

Links
Other AP2 family TFs
Other *Amborella trichopoda* TFs

1544 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
PGTG_10028	Puccinia graminis	PGTG_10028	I	0.000
FFUJ_02729	Fusarium fujikuroi	FFUJ_02729	I	0.000
FPSE_02664	Fusarium pseudograminearum	FPSE_02664	I	0.000
GLRG_01394	Colletotrichum graminicola	GLRG_01394	I	0.000
GSTUM_00011974001	Tuber melanosporum	GSTUM_00011974001	I	0.000
M408DRAFT_328926	Serendipita vermifera	M408DRAFT_328926	I	0.000
MAJ_04030	Metarhizium majus	MAJ_04030	I	0.000
MANI_030028	Metarhizium anisopliae	MANI_030028	I	0.000
MBR_01483	Metarhizium brunneum	MBR_01483	I	0.000
MELLADRAFT_85039	Melampsora laricipopulina	MELLADRAFT_85039	I	0.000
MGG_01641	Magnaporthe oryzae	MGG_01641	I	0.000
MGU_02157	Metarhizium guizhouense	MGU_02157	I	0.000
MYCTH_2294934	Myceliophthora thermophila	MYCTH_2294934	I	0.000
OIDMADRAFT_143526	Oidiodendron maius	OIDMADRAFT_143526	I	0.000
RO3G_07543	Rhizopus oryzae	RO3G_07543	I	0.000
PGTG_12120	Puccinia graminis	PGTG_12120	I	0.000
S40288_09735	Stachybotrys chartarum	S40288_09735	I	0.000
SAPIO_CDS3355	Scedosporium apiospermum	SAPIO_CDS3355	I	0.000
VDAG_04140	Verticillium dahliae	VDAG_04140	I	0.000
VDAG_09161	Verticillium dahliae	VDAG_09161	I	0.000
VDBG_04589	Verticillium alfalfae	VDBG_04589	I	0.000
X797_001988	Metarhizium robertsii	X797_001988	I	0.000
17746	Aureococcus anophagefferens	17746	I	0.000
estExt_fgeneshMC_pg.C_20910	Mucor circinelloides	estExt_fgeneshMC_pg.C_20910	I	0.000
fgeneshMC_pg.1_#_1771	Mucor circinelloides	fgeneshMC_pg.1_#_1771	I	0.000
fgeneshMC_pg.3_#_1190	Mucor circinelloides	fgeneshMC_pg.3_#_1190	I	0.000
gw1.72.30.1	Phycomyces blakesleeanus	gw1.72.30.1	I	0.000
tox4.S	Xenopus laevis	XB-GENE-993810	I	0.000
CSUB01_00364	Colletotrichum sublineola	CSUB01_00364	I	0.000
DRE_06603	Drechslerella stenobrocha	DRE_06603	I	0.000
RO3G_07013	Rhizopus oryzae	RO3G_07013	I	0.000
RO3G_09728	Rhizopus oryzae	RO3G_09728	I	0.000
RO3G_15755	Rhizopus oryzae	RO3G_15755	I	0.000
RO3G_16060	Rhizopus oryzae	RO3G_16060	I	0.000
CH063_04081	Colletotrichum higginsianum	CH063_04081	I	0.000
CGGC5_9539	Colletotrichum gloeosporioides	CGGC5_9539	I	0.000
VDBG_04589	Verticillium albo atrum	VDBG_04589	I	0.000
CFIO01_13531	Colletotrichum fioriniae	CFIO01_13531	I	0.000
ACRE_011600	Acremonium chrysogenum	ACRE_011600	I	0.000
ENSGGOG00000025016	Gorilla gorilla	ENSGGOG00000025016	I	0.000
AOL_s00076g81	Arthrobotrys oligospora	AOL_s00076g81	I	0.000
tox4b	Danio rerio	ENSDARG00000100163	I	0.000
e_gw1.30.104.1	Phycomyces blakesleeanus	e_gw1.30.104.1	N	0.000
UCRNP2_5474	Neofusicoccum parvum	UCRNP2_5474	N	0.000
PV09_06039	Verruconis gallopava	PV09_06039	N	0.000
fgenesh2_pg.scaffold_177000008	Branchiostoma floridae	fgenesh2_pg.scaffold_177000008	N	0.000
fgenesh2_pg.scaffold_19000069	Branchiostoma floridae	fgenesh2_pg.scaffold_19000069	N	0.000
LCUP006200	Lucilia cuprina	LCUP006200	N	0.000
XP_002936155	Xenopus tropicalis	XP_002936155	N	0.000
MDOA008605	Musca domestica	MDOA008605	N	0.000
ENSONIG00000016627	Oreochromis niloticus	ENSONIG00000016627	N	0.000
tox2	Takifugu rubripes	ENSTRUG00000013848	N	0.000
ENSXMAG00000016763	Xiphophorus maculatus	ENSXMAG00000016763	N	0.000
ENSTGUG00000003811	Taeniopygia guttata	ENSTGUG00000003811	N	0.000
ENSSSCG00000023554	Sus scrofa	ENSSSCG00000023554	N	0.000
ENSPFOG00000008402	Poecilia formosa	ENSPFOG00000008402	N	0.000
ENSPFOG00000002336	Poecilia formosa	ENSPFOG00000002336	N	0.000
HelroG145107	Helobdella robusta	HelroG145107	N	0.000
tox2	Oryzias latipes	ENSORLG00000004818	N	0.000
tox2	Tetraodon nigroviridis	ENSTNIG00000005683	N	0.000
ENSMMUG00000014077	Macaca mulatta	ENSMMUG00000014077	N	0.000
ENSGMOG00000013406	Gadus morhua	ENSGMOG00000013406	N	0.000
ENSGMOG00000008081	Gadus morhua	ENSGMOG00000008081	N	0.000
tox2	Gasterosteus aculeatus	ENSGACG00000006914	N	0.000
ENSCSAVG00000009270	Ciona savignyi	ENSCSAVG00000009270	N	0.000
ENSCING00000009516	Ciona intestinalis	ENSCING00000009516	N	0.000
E5Q_03709	Mixia osmundae	E5Q_03709	N	0.000

AMTR_s00148p00084540 (Amborella trichopoda) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1544 Related TFs

AMTR_s00148p00084540 **(Amborella trichopoda)
AP2**