Bo6g113020 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g113020 T000874_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.818 0.960
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.818 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g113020.1 AP2 21 72

Links

Other AP2 family TFs
Other Brassica oleracea TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF021 Arabidopsis thaliana AT1G71450 D 0.818
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.729
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.748
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.777
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.712
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.743
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.761
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.680
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.751
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.771
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.717
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.776
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.818
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.759
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.688
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.818
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.703
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.774
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.694
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.775
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.777
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.678
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.755
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.769
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.740
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.780
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.808
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.701
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.682
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.684
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.773
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.773
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.684
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.682
27805.m000021 Ricinus communis 27805.m000021 I 0.704
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.717
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.776
MDP0000283350 Malus domestica MDP0000283350 I 0.792
MDP0000151428 Malus domestica MDP0000151428 I 0.698
MDP0000122740 Malus domestica MDP0000122740 I 0.698
MDP0000122739 Malus domestica MDP0000122739 I 0.698
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.745
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.743
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.728
Bra016136 Brassica rapa Bra016136 I 0.831
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.742
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.765
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.746
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.780
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.705
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.780
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.780
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.696
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.818
Bra028009 Brassica rapa Bra028009 I 0.686
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.677
Bra010210 Brassica rapa Bra010210 I 0.707
Bra007975 Brassica rapa Bra007975 I 0.803
Bra003924 Brassica rapa Bra003924 I 0.783
Bo8g027240 Brassica oleracea Bo8g027240 I 0.705
Bo6g094210 Brassica oleracea Bo6g094210 I 0.783
Bo6g046850 Brassica oleracea Bo6g046850 I 0.680
Bo5g086680 Brassica oleracea Bo5g086680 I 0.707
Bo2g072910 Brassica oleracea Bo2g072910 I 0.818
ERF022 Arabidopsis thaliana AT1G33760 I 0.700
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.694
TCM_036269 Theobroma cacao TCM_036269 I 0.746
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.683
Pm004272 Prunus mume Pm004272 I 0.703
Pm004269 Prunus mume Pm004269 I 0.774
Cla012665 Citrullus lanatus Cla012665 I 0.769
Cla012661 Citrullus lanatus Cla012661 I 0.694
Ca_15064 Cicer arietinum Ca_15064 I 0.683
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.725
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.717
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.693
TCM_036270 Theobroma cacao TCM_036270 I 0.725
28118.m000034 Ricinus communis 28118.m000034 I 0.753
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.759
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.743
Si026882m.g Setaria italica Si026882m.g I 0.694
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.702
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.774
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.682
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.771
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.766
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.682